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Report for CCDS12006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12006.1 Public Homo sapiens 18 CNDP2 24 110 108 CCDS HistoryNCBI Gene:55748Re-query CCDS DB by CCDS ID:12006.1Re-query CCDS DB by GeneID:55748See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324262.9 ENSP00000325548.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000324262.9Link to Ensembl Protein Viewer:ENSP00000325548.4Re-query CCDS DB by Nucleotide ID:ENST00000324262Re-query CCDS DB by Protein ID:ENSP00000325548
Original member Current member EBI ENST00000579847.5 ENSP00000462311.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579847.5Link to Ensembl Protein Viewer:ENSP00000462311.1Re-query CCDS DB by Nucleotide ID:ENST00000579847Re-query CCDS DB by Protein ID:ENSP00000462311
Original member Current member NCBI NM_001370248.1 NP_001357177.1 Accepted alive Link to Nucleotide Sequence:NM_001370248.1Link to Protein Sequence:NP_001357177.1Re-query CCDS DB by Nucleotide ID:NM_001370248Re-query CCDS DB by Protein ID:NP_001357177Link to BLAST:NP_001357177.1
Original member Current member NCBI NM_001370249.1 NP_001357178.1 Accepted alive Link to Nucleotide Sequence:NM_001370249.1Link to Protein Sequence:NP_001357178.1Re-query CCDS DB by Nucleotide ID:NM_001370249Re-query CCDS DB by Protein ID:NP_001357178Link to BLAST:NP_001357178.1
Original member Current member NCBI NM_001370250.1 NP_001357179.1 Accepted alive Link to Nucleotide Sequence:NM_001370250.1Link to Protein Sequence:NP_001357179.1Re-query CCDS DB by Nucleotide ID:NM_001370250Re-query CCDS DB by Protein ID:NP_001357179Link to BLAST:NP_001357179.1
Original member Current member NCBI NM_018235.3 NP_060705.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018235.3Link to Protein Sequence:NP_060705.2Re-query CCDS DB by Nucleotide ID:NM_018235Re-query CCDS DB by Protein ID:NP_060705Link to BLAST:NP_060705.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357177.1 475 Q96KP4-1 475 100% 0 0
NP_001357178.1 475 Q96KP4-1 475 100% 0 0
NP_001357179.1 475 Q96KP4-1 475 100% 0 0
NP_060705.2 475 Q96KP4-1 475 100% 0 0

Chromosomal Locations for CCDS 12006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 74499974 74500033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74501329 74501472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74505849 74506011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74508840 74508928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74510813 74511013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74512448 74512532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74513559 74513719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74516228 74516392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74518499 74518640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74518949 74519096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 74519999 74520068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGCGGCCCTCACTACCCTGTTTAAGTACATAGATGAAAATCAGGATCGCTACATTAAGAAACTCGCAA
AATGGGTGGCTATCCAGAGTGTGTCTGCGTGGCCGGAGAAGAGAGGCGAAATCAGGAGGATGATGGAAGT
TGCTGCTGCAGATGTTAAGCAGTTGGGGGGCTCTGTGGAACTGGTGGATATCGGAAAACAAAAGCTCCCT
GATGGCTCGGAGATCCCGCTCCCTCCTATTCTGCTCGGCAGGCTGGGCTCCGACCCACAGAAGAAGACCG
TGTGCATTTACGGGCACCTGGATGTGCAGCCTGCAGCCCTGGAGGACGGCTGGGACAGCGAGCCCTTCAC
CCTGGTGGAGCGAGACGGCAAGCTGTATGGGAGAGGTTCGACTGATGATAAGGGCCCGGTGGCCGGCTGG
ATAAACGCCCTGGAAGCGTATCAGAAAACAGGCCAGGAGATTCCTGTCAACGTCCGATTCTGCCTCGAAG
GCATGGAGGAGTCAGGCTCTGAGGGCCTAGACGAGCTGATTTTTGCCCGGAAAGACACATTCTTTAAGGA
TGTGGACTATGTCTGCATTTCTGACAATTACTGGCTGGGAAAGAAGAAGCCCTGCATCACCTACGGCCTC
AGGGGCATTTGCTACTTTTTCATCGAGGTGGAGTGCAGCAACAAAGACCTCCATTCTGGGGTGTACGGGG
GCTCGGTGCATGAGGCCATGACTGATCTCATTTTGCTGATGGGCTCTTTGGTGGACAAGAGGGGGAACAT
CCTGATCCCCGGCATTAACGAGGCCGTGGCCGCCGTCACGGAAGAGGAGCACAAGCTGTACGACGACATC
GACTTTGACATAGAGGAGTTTGCCAAGGATGTGGGGGCGCAGATCCTCCTGCACAGCCACAAGAAAGACA
TCCTCATGCACCGATGGCGGTACCCGTCTCTGTCCCTCCATGGCATCGAAGGCGCCTTCTCTGGGTCTGG
GGCCAAGACCGTGATTCCCAGGAAGGTGGTTGGCAAGTTCTCCATCAGGCTCGTGCCGAACATGACTCCT
GAAGTCGTCGGCGAGCAGGTCACAAGCTACCTAACTAAGAAGTTTGCTGAACTACGCAGCCCCAATGAGT
TCAAGGTGTACATGGGCCACGGTGGGAAGCCCTGGGTCTCCGACTTCAGTCACCCTCATTACCTGGCTGG
GAGAAGAGCCATGAAGACAGTTTTTGGTGTTGAGCCAGACTTGACCAGGGAAGGCGGCAGTATTCCCGTG
ACCTTGACCTTTCAGGAGGCCACGGGCAAGAACGTCATGCTGCTGCCTGTGGGGTCAGCGGATGACGGAG
CCCACTCCCAGAATGAAAAGCTCAACAGGTATAACTACATAGAGGGAACCAAGATGCTGGCCGCGTACCT
GTATGAGGTCTCCCAGCTGAAGGACTAG

Translation (475 aa):
MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVELVDIGKQKLP
DGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGSTDDKGPVAGW
INALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFARKDTFFKDVDYVCISDNYWLGKKKPCITYGL
RGICYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDI
DFDIEEFAKDVGAQILLHSHKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTP
EVVGEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV
TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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