NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1200.1 Public Homo sapiens 1 DCAF8 24 110 108 CCDS HistoryNCBI Gene:50717Re-query CCDS DB by CCDS ID:1200.1Re-query CCDS DB by GeneID:50717See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326837.6 ENSP00000318227.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326837.6Link to Ensembl Protein Viewer:ENSP00000318227.2Re-query CCDS DB by Nucleotide ID:ENST00000326837Re-query CCDS DB by Protein ID:ENSP00000318227
Original member Current member EBI ENST00000368073.7 ENSP00000357052.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368073.7Link to Ensembl Protein Viewer:ENSP00000357052.3Re-query CCDS DB by Nucleotide ID:ENST00000368073Re-query CCDS DB by Protein ID:ENSP00000357052
Original member Current member EBI ENST00000368074.6 ENSP00000357053.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368074.6Link to Ensembl Protein Viewer:ENSP00000357053.1Re-query CCDS DB by Nucleotide ID:ENST00000368074Re-query CCDS DB by Protein ID:ENSP00000357053
Original member Current member NCBI NM_015726.4 NP_056541.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015726.4Link to Protein Sequence:NP_056541.2Re-query CCDS DB by Nucleotide ID:NM_015726Re-query CCDS DB by Protein ID:NP_056541Link to BLAST:NP_056541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056541.2 597 Q5TAQ9-1 597 100% 0 0

Chromosomal Locations for CCDS 1200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160217592 160217708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160218324 160218440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160218849 160218968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160222651 160222781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160224442 160224549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160225062 160225119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160225591 160225663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160231297 160231407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160237135 160237229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160238607 160238747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160239697 160240370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160243960 160244008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGTCCAGCAAAGGGAGCAGCACAGATGGCAGAACAGACTTAGCTAATGGAAGCCTGTCTAGCAGTCCAG
AGGAGATGTCTGGAGCTGAAGAGGGGAGGGAGACATCCTCAGGCATTGAAGTGGAGGCCTCAGACCTGAG
TTTGAGCTTGACTGGGGATGATGGTGGCCCCAACCGCACCAGCACAGAAAGTCGAGGCACAGACACAGAG
AGCTCAGGTGAAGATAAGGACTCTGACAGCATGGAGGACACTGGTCATTACTCCATTAATGATGAAAATC
GAGTCCATGACCGCTCAGAGGAAGAGGAAGAGGAGGAAGAAGAGGAGGAAGAAGAGCAGCCTCGGCGCCG
TGTACAGCGCAAGCGGGCTAACCGTGACCAGGACTCATCAGATGATGAGCGGGCCCTAGAGGACTGGGTG
TCCTCAGAAACATCAGCTCTACCCCGACCTCGCTGGCAAGCCCTCCCTGCCCTTCGGGAGCGGGAGCTGG
GTTCAAGTGCCCGCTTTGTCTATGAGGCCTGTGGGGCAAGAGTCTTTGTGCAGCGTTTCCGCCTGCAGCA
TGGGCTTGAGGGCCATACTGGTTGTGTCAATACCCTGCACTTTAACCAGCGCGGCACCTGGCTGGCCAGT
GGCAGCGATGACCTGAAGGTGGTGGTGTGGGATTGGGTACGGCGGCAGCCAGTACTGGACTTTGAGAGTG
GCCACAAAAGTAATGTGTTCCAGGCCAAGTTTCTTCCTAACAGTGGTGATTCTACTCTGGCCATGTGTGC
CCGTGACGGGCAGGTTCGAGTAGCAGAACTGTCTGCCACACAGTGTTGCAAGAATACAAAACGTGTGGCC
CAGCACAAGGGAGCGTCCCACAAGTTGGCACTGGAACCAGACTCTCCCTGTACGTTCTTATCTGCAGGTG
AAGATGCAGTTGTTTTCACCATTGACCTGAGACAAGACCGCCCAGCGTCGAAACTGGTGGTGACAAAAGA
GAAAGAGAAGAAAGTGGGGCTGTATACGATCTATGTGAATCCTGCCAATACCCACCAGTTTGCAGTGGGT
GGACGAGATCAGTTTGTAAGGATTTATGACCAGAGGAAAATTGATGAGAATGAGAACAATGGAGTACTCA
AGAAGTTCTGTCCTCATCACCTGGTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCA
CGACGGCACAGAGCTCCTGGCCAGTTACAATGATGAAGACATTTACCTCTTCAACTCCTCTCACAGTGAT
GGGGCCCAGTATGTTAAGAGATACAAGGGCCACAGAAATAATGCCACAGTAAAAGGCGTCAATTTCTATG
GCCCCAAGAGTGAGTTTGTGGTGAGCGGTAGTGACTGTGGGCACATCTTCCTCTGGGAGAAATCATCCTG
CCAGATTATTCAGTTCATGGAGGGGGACAAGGGAGGCGTGGTAAACTGTCTTGAGCCCCACCCTCACCTG
CCTGTGCTGGCAACCAGTGGCCTAGACCATGATGTGAAGATCTGGGCACCCACAGCTGAAGCTTCCACTG
AGCTGACAGGGTTAAAAGATGTGATTAAGAAGAACAAGCGGGAGCGGGATGAAGATAGCTTGCACCAAAC
TGACCTGTTTGATAGTCACATGCTGTGGTTCCTTATGCATCACCTGAGACAGAGACGCCATCACCGGCGC
TGGCGAGAACCTGGGGTTGGGGCCACAGACGCGGACTCTGATGAGTCTCCCAGCTCCTCAGACACATCGG
ACGAGGAGGAGGGCCCTGACCGGGTGCAGTGCATGCCATCTTGA

Translation (597 aa):
MSSKGSSTDGRTDLANGSLSSSPEEMSGAEEGRETSSGIEVEASDLSLSLTGDDGGPNRTSTESRGTDTE
SSGEDKDSDSMEDTGHYSINDENRVHDRSEEEEEEEEEEEEEQPRRRVQRKRANRDQDSSDDERALEDWV
SSETSALPRPRWQALPALRERELGSSARFVYEACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLAS
GSDDLKVVVWDWVRRQPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKNTKRVA
QHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDRPASKLVVTKEKEKKVGLYTIYVNPANTHQFAVG
GRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSD
GAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHL
PVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLHQTDLFDSHMLWFLMHHLRQRRHHRR
WREPGVGATDADSDESPSSSDTSDEEEGPDRVQCMPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH