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Report for CCDS11994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11994.1 Public Homo sapiens 18 CDH19 24 110 108 CCDS HistoryNCBI Gene:28513Re-query CCDS DB by CCDS ID:11994.1Re-query CCDS DB by GeneID:28513See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262150.7 ENSP00000262150.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262150.7Link to Ensembl Protein Viewer:ENSP00000262150.2Re-query CCDS DB by Nucleotide ID:ENST00000262150Re-query CCDS DB by Protein ID:ENSP00000262150
Original member Current member NCBI NM_021153.4 NP_066976.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021153.4Link to Protein Sequence:NP_066976.1Re-query CCDS DB by Nucleotide ID:NM_021153Re-query CCDS DB by Protein ID:NP_066976Link to BLAST:NP_066976.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066976.1 772 Q9H159-1 772 100% 0 0

Chromosomal Locations for CCDS 11994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 66504812 66505302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66508995 66509246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66511568 66511685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66529845 66529966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66534986 66535107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66543971 66544224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66544719 66544903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66551094 66551258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66554405 66554524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66568416 66568710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66572010 66572204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGAACTGTTATTTACTGCTGCGTTTTATGTTGGGAATTCCTCTCCTATGGCCTTGTCTTGGAGCAACAG
AA
AACTCTCAAACAAAGAAAGTCAAGCAGCCAGTGCGATCTCATTTGAGAGTGAAGCGTGGCTGGGTGTG
G
AACCAATTTTTTGTACCAGAGGAAATGAATACGACTAGTCATCACATCGGCCAGCTAAGATCTGATTTA
GAC
AATGGAAACAATTCTTTCCAGTACAAGCTTTTGGGAGCTGGAGCTGGAAGTACTTTTATCATTGATG
AA
AGAACAGGTGACATATATGCCATACAGAAGCTTGATAGAGAGGAGCGATCCCTCTACATCTTAAGAGC
C
CAGGTAATAGACATCGCTACTGGAAGGGCTGTGGAACCTGAGTCTGAGTTTGTCATCAAAGTTTCGGAT
ATC
AATGACAATGAACCAAAATTCCTAGATGAACCTTATGAGGCCATTGTACCAGAGATGTCTCCAGAAG
GA
ACATTAGTTATCCAGGTGACAGCAAGTGATGCTGACGATCCCTCAAGTGGTAATAATGCTCGTCTCCT
C
TACAGCTTACTTCAAGGCCAGCCATATTTTTCTGTTGAACCAACAACAGGAGTCATAAGAATATCTTCT
AAA
ATGGATAGAGAACTGCAAGATGAGTATTGGGTAATCATTCAAGCCAAGGACATGATTGGTCAGCCAG
GA
GCGTTGTCTGGAACAACAAGTGTATTAATTAAACTTTCAGATGTTAATGACAATAAGCCTATATTTAA
A
GAAAGTTTATACCGCTTGACTGTCTCTGAATCTGCACCCACTGGGACTTCTATAGGAACAATCATGGCA
TAT
GATAATGACATAGGAGAGAATGCAGAAATGGATTACAGCATTGAAGAGGATGATTCGCAAACATTTG
AC
ATTATTACTAATCATGAAACTCAAGAAGGAATAGTTATATTAAAAAAGAAAGTGGATTTTGAGCACCA
G
AACCACTACGGTATTAGAGCAAAAGTTAAAAACCATCATGTTCCTGAGCAGCTCATGAAGTACCACACT
GAG
GCTTCCACCACTTTCATTAAGATCCAGGTGGAAGATGTTGATGAGCCTCCTCTTTTCCTCCTTCCAT
AT
TATGTATTTGAAGTTTTTGAAGAAACCCCACAGGGATCATTTGTAGGCGTGGTGTCTGCCACAGACCC
A
GACAATAGGAAATCTCCTATCAGGTATTCTATTACTAGGAGCAAAGTGTTCAATATCAATGATAATGGT
ACA
ATCACTACAAGTAACTCACTGGATCGTGAAATCAGTGCTTGGTACAACCTAAGTATTACAGCCACAG
AA
AAATACAATATAGAACAGATCTCTTCGATCCCACTGTATGTGCAAGTTCTTAACATCAATGATCATGC
T
CCTGAGTTCTCTCAATACTATGAGACTTATGTTTGTGAAAATGCAGGCTCTGGTCAGGTAATTCAGACT
ATC
AGTGCAGTGGATAGAGATGAATCCATAGAAGAGCACCATTTTTACTTTAATCTATCTGTAGAAGACA
CT
AACAATTCAAGTTTTACAATCATAGATAATCAAGATAACACAGCTGTCATTTTGACTAATAGAACTGG
T
TTTAACCTTCAAGAAGAACCTGTCTTCTACATCTCCATCTTAATTGCCGACAATGGAATCCCGTCACTT
ACA
AGTACAAACACCCTTACCATCCATGTCTGTGACTGTGGTGACAGTGGGAGCACACAGACCTGCCAGT
AC
CAGGAGCTTGTGCTTTCCATGGGATTCAAGACAGAAGTCATCATTGCTATTCTCATTTGCATTATGAT
C
ATATTTGGGTTTATTTTTTTGACTTTGGGTTTAAAACAACGGAGAAAACAGATTCTATTTCCTGAGAAA
AGT
GAAGATTTCAGAGAGAATATATTCCAATATGATGATGAAGGGGGTGGAGAAGAAGATACAGAGGCCT
TT
GATATAGCAGAGCTGAGGAGTAGTACCATAATGCGGGAACGCAAGACTCGGAAAACCACAAGCGCTGA
G
ATCAGGAGCCTATACAGGCAGTCTTTGCAAGTTGGCCCCGACAGTGCCATATTCAGGAAATTCATTCTG
GAA
AAGCTCGAAGAAGCTAATACTGATCCGTGTGCCCCTCCTTTTGATTCCCTCCAGACCTACGCTTTTG
AG
GGAACAGGGTCATTAGCTGGATCCCTGAGCTCCTTAGAATCAGCAGTCTCTGATCAGGATGAAAGCTA
T
GATTACCTTAATGAGTTGGGACCTCGCTTTAAAAGATTAGCATGCATGTTTGGTTCTGCAGTGCAGTCA
AAT
AATTAG


Translation (772 aa):
MNCYLLLRFMLGIPLLWPCLGATENSQTKKVKQPVRSHLRVKRGWVWNQFFVPEEMNTTSHHIGQLRSDL
D
NGNNSFQYKLLGAGAGSTFIIDERTGDIYAIQKLDREERSLYILRAQVIDIATGRAVEPESEFVIKVSD
I
NDNEPKFLDEPYEAIVPEMSPE
GTLVIQVTASDADDPSSGNNARLLYSLLQGQPYFSVEPTTGVIRISS
K
MDRELQDEYWVIIQAKDMIGQPGALSGTTSVLIKLSDVNDNKPIFKE
SLYRLTVSESAPTGTSIGTIMA
Y
DNDIGENAEMDYSIEEDDSQTFDIITNHETQEGIVILKK
KVDFEHQNHYGIRAKVKNHHVPEQLMKYHT
E
ASTTFIKIQVEDVDEPPLFLLPYYVFEVFEETPQGSFVGVVSATDPDNRKSPI
RYSITRSKVFNINDNG
T
ITTSNSLDREISAWYNLSITATEK
YNIEQISSIPLYVQVLNINDHAPEFSQYYETYVCENAGSGQVIQT
I
SAVDRDESIEEHHFYFNLSVEDTNNSSFTIIDNQ
DNTAVILTNRTGFNLQEEPVFYISILIADNGIPSL
T
STNTLTIHVCDCGDSGSTQTCQYQELVLSMGFKTEVIIAILICIMIIF
GFIFLTLGLKQRRKQILFPEK
S
EDFRENIFQYDDEGGGEEDTEAFDIAELRSSTIMRERKTRKTTSAEIRSLYRQSLQVGPDSAIFRKFIL
E
KLEEANTDPCAPPFDSLQTYAFEGTGSLAGSLSSLESAVSDQDESYDYLNELGPRFKRLACMFGSAVQS
N
N




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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