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Report for CCDS11970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11970.1 Public Homo sapiens 18 SEC11C 24 110 108 CCDS HistoryNCBI Gene:90701Re-query CCDS DB by CCDS ID:11970.1Re-query CCDS DB by GeneID:90701See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11970.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000587834.6 ENSP00000468633.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000587834.6Link to Ensembl Protein Viewer:ENSP00000468633.1Re-query CCDS DB by Nucleotide ID:ENST00000587834Re-query CCDS DB by Protein ID:ENSP00000468633
Original member Current member NCBI NM_033280.4 NP_150596.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033280.4Link to Protein Sequence:NP_150596.1Re-query CCDS DB by Nucleotide ID:NM_033280Re-query CCDS DB by Protein ID:NP_150596Link to BLAST:NP_150596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150596.1 192 Q9BY50 192 100% 0 0

Chromosomal Locations for CCDS 11970.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 59139949 59140035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59149513 59149622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59152536 59152685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59155688 59155807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59157608 59157665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59158632 59158685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGTGCGTGCGGGCGCCGTGGGGGCTCATCTCCCCGCGTCCGGCTTGGATATCTTCGGGGACCTGAAGA
AGATGAACAAGCGCCAGCTCTATTACCAGGTTTTAAACTTCGCCATGATCGTGTCTTCTGCACTCATGAT
ATGGAAAGGCTTGATCGTGCTCACAGGCAGTGAGAGCCCCATCGTGGTGGTGCTGAGTGGCAGTATGGAG
CCGGCCTTTCACAGAGGAGACCTCCTGTTCCTCACAAATTTCCGGGAAGACCCAATCAGAGCTGGTGAAA
TAGTTGTTTTTAAAGTTGAAGGACGAGACATTCCAATAGTTCACAGAGTAATCAAAGTTCATGAAAAAGA
TAATGGAGACATCAAATTTCTGACTAAAGGAGATAATAATGAAGTTGATGATAGAGGCTTGTACAAAGAA
GGCCAGAACTGGCTGGAAAAGAAGGACGTGGTGGGAAGAGCAAGAGGGTTTTTACCATATGTTGGTATGG
TCACCATAATAATGAATGACTATCCAAAATTCAAGTATGCTCTTTTGGCTGTAATGGGTGCATATGTGTT
ACTAAAACGTGAATCCTAA

Translation (192 aa):
MVRAGAVGAHLPASGLDIFGDLKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSME
PAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGLYKE
GQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRES


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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