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Report for CCDS11959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11959.1 Public Homo sapiens 18 CCDC68 24 110 108 CCDS HistoryNCBI Gene:80323Re-query CCDS DB by CCDS ID:11959.1Re-query CCDS DB by GeneID:80323See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11959.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337363.8 ENSP00000337209.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337363.8Link to Ensembl Protein Viewer:ENSP00000337209.3Re-query CCDS DB by Nucleotide ID:ENST00000337363Re-query CCDS DB by Protein ID:ENSP00000337209
Original member Current member EBI ENST00000432185.5 ENSP00000413406.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432185.5Link to Ensembl Protein Viewer:ENSP00000413406.1Re-query CCDS DB by Nucleotide ID:ENST00000432185Re-query CCDS DB by Protein ID:ENSP00000413406
Original member Current member EBI ENST00000591504.6 ENSP00000466690.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000591504.6Link to Ensembl Protein Viewer:ENSP00000466690.1Re-query CCDS DB by Nucleotide ID:ENST00000591504Re-query CCDS DB by Protein ID:ENSP00000466690
Original member Current member NCBI NM_001143829.2 NP_001137301.1 Accepted alive Link to Nucleotide Sequence:NM_001143829.2Link to Protein Sequence:NP_001137301.1Re-query CCDS DB by Nucleotide ID:NM_001143829Re-query CCDS DB by Protein ID:NP_001137301Link to BLAST:NP_001137301.1
Original member Current member NCBI NM_025214.3 NP_079490.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025214.3Link to Protein Sequence:NP_079490.1Re-query CCDS DB by Nucleotide ID:NM_025214Re-query CCDS DB by Protein ID:NP_079490Link to BLAST:NP_079490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137301.1 335 Q9H2F9 335 100% 0 0
NP_079490.1 335 Q9H2F9 335 100% 0 0

Chromosomal Locations for CCDS 11959.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 54904358 54904415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54907786 54907862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54917913 54917996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54919271 54919376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54928800 54928882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54934820 54934948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54936833 54936958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54937957 54938097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54940997 54941083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 54942675 54942791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGACAACAGTGACAGTGACCACAGAAATTCCCCCAAGGGATAAGATGGAAGATAATTCTGCCTTGTATG
AGTCTACGTCCGCTCACATTATTGAAGAAACCGAGTATGTGAAAAAGATTCGAACTACTCTGCAAAAGAT
CAGGACCCAGATGTTTAAAGATGAAATAAGACATGACAGTACAAATCACAAACTAGATGCAAAGCACTGT
GGAAACCTTCAACAGGGCTCTGATTCTGAAATGGATCCTTCTTGTTGCAGTTTGGATTTGCTTATGAAAA
AGATAAAAGGAAAAGACCTACAGCTCTTAGAAATGAACAAAGAGAATGAAGTATTGAAAATCAAGCTGCA
AGCCTCCAGAGAAGCAGGAGCAGCAGCTCTGAGAAACGTGGCCCAGAGATTATTTGAAAACTACCAAACG
CAATCTGAAGAAGTGAGAAAGAAGCAGGAGGACAGTAAACAATTACTCCAGGTTAACAAGCTTGAAAAAG
AACAGAAATTGAAACAACATGTTGAAAATCTGAATCAAGTTGCTGAAAAACTTGAAGAAAAACACAGTCA
AATTACAGAATTGGAGAACCTTGTACAGAGAATGGAAAAGGAAAAGAGAACACTACTAGAAAGAAAACTG
TCTTTGGAAAACAAGCTACTGCAACTCAAATCCAGTGCTACATATGGAAAAAGTTGCCAGGATCTTCAGA
GGGAGATTTCCATTCTCCAGGAGCAGATCTCTCATCTGCAGTTTGTGATTCACTCCCAACATCAGAACCT
GCGCAGTGTCATCCAGGAGATGGAAGGATTAAAAAATAATTTAAAAGAACAAGACAAAAGAATTGAAAAT
CTCAGAGAAAAGGTTAACATACTTGAAGCCCAGAATAAAGAACTAAAAACCCAGGTAGCACTTTCATCTG
AAACTCCTAGGACAAAGGTATCTAAGGCTGTCTCTACAAGTGAATTGAAGACCGAAGGTGTTTCCCCTTA
TTTAATGTTGATTAGGTTACGGAAATGA

Translation (335 aa):
MTTVTVTTEIPPRDKMEDNSALYESTSAHIIEETEYVKKIRTTLQKIRTQMFKDEIRHDSTNHKLDAKHC
GNLQQGSDSEMDPSCCSLDLLMKKIKGKDLQLLEMNKENEVLKIKLQASREAGAAALRNVAQRLFENYQT
QSEEVRKKQEDSKQLLQVNKLEKEQKLKQHVENLNQVAEKLEEKHSQITELENLVQRMEKEKRTLLERKL
SLENKLLQLKSSATYGKSCQDLQREISILQEQISHLQFVIHSQHQNLRSVIQEMEGLKNNLKEQDKRIEN
LREKVNILEAQNKELKTQVALSSETPRTKVSKAVSTSELKTEGVSPYLMLIRLRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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