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Report for CCDS11943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11943.1 Public Homo sapiens 18 MBD1 24 110 108 CCDS HistoryNCBI Gene:4152Re-query CCDS DB by CCDS ID:11943.1Re-query CCDS DB by GeneID:4152See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269468.10 ENSP00000269468.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269468.10Link to Ensembl Protein Viewer:ENSP00000269468.5Re-query CCDS DB by Nucleotide ID:ENST00000269468Re-query CCDS DB by Protein ID:ENSP00000269468
Original member Current member EBI ENST00000382948.9 ENSP00000372407.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382948.9Link to Ensembl Protein Viewer:ENSP00000372407.5Re-query CCDS DB by Nucleotide ID:ENST00000382948Re-query CCDS DB by Protein ID:ENSP00000372407
Original member Current member EBI ENST00000591416.5 ENSP00000467017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591416.5Link to Ensembl Protein Viewer:ENSP00000467017.1Re-query CCDS DB by Nucleotide ID:ENST00000591416Re-query CCDS DB by Protein ID:ENSP00000467017
Original member Current member NCBI NM_001204139.2 NP_001191068.1 Accepted alive Link to Nucleotide Sequence:NM_001204139.2Link to Protein Sequence:NP_001191068.1Re-query CCDS DB by Nucleotide ID:NM_001204139Re-query CCDS DB by Protein ID:NP_001191068Link to BLAST:NP_001191068.1
Original member Current member NCBI NM_001388138.1 NP_001375067.1 Accepted alive Link to Nucleotide Sequence:NM_001388138.1Link to Protein Sequence:NP_001375067.1Re-query CCDS DB by Nucleotide ID:NM_001388138Re-query CCDS DB by Protein ID:NP_001375067Link to BLAST:NP_001375067.1
Original member Current member NCBI NM_001399897.1 NP_001386826.1 Accepted alive Link to Nucleotide Sequence:NM_001399897.1Link to Protein Sequence:NP_001386826.1Re-query CCDS DB by Nucleotide ID:NM_001399897Re-query CCDS DB by Protein ID:NP_001386826Link to BLAST:NP_001386826.1
Original member Current member NCBI NM_001399898.1 NP_001386827.1 Accepted alive Link to Nucleotide Sequence:NM_001399898.1Link to Protein Sequence:NP_001386827.1Re-query CCDS DB by Nucleotide ID:NM_001399898Re-query CCDS DB by Protein ID:NP_001386827Link to BLAST:NP_001386827.1
Original member Current member NCBI NM_015846.4 NP_056671.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015846.4Link to Protein Sequence:NP_056671.2Re-query CCDS DB by Nucleotide ID:NM_015846Re-query CCDS DB by Protein ID:NP_056671Link to BLAST:NP_056671.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191068.1 605 Q9UIS9-1 605 100% 0 0
NP_001375067.1 605 Q9UIS9-1 605 100% 0 0
NP_001386826.1 605 Q9UIS9-1 605 100% 0 0
NP_001386827.1 605 Q9UIS9-1 605 100% 0 0
NP_056671.2 605 Q9UIS9-1 605 100% 0 0

Chromosomal Locations for CCDS 11943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50271501 50271540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50272677 50272738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50272824 50272955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50273334 50273471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50273564 50273863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50274186 50274353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50274977 50275045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50275129 50275245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50275600 50275728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50275835 50275981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50276378 50276418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50276662 50276744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50276832 50276998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50277090 50277204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50279883 50279992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1818 nt):
ATGGCTGAGGACTGGCTGGACTGCCCGGCCCTGGGCCCTGGCTGGAAGCGCCGCGAAGTCTTTCGCAAGT
CAGGGGCCACCTGTGGACGCTCAGACACCTATTACCAGAGCCCCACAGGAGACAGGATCCGAAGCAAAGT
TGAGCTGACTCGATACCTGGGCCCTGCGTGTGATCTCACCCTCTTCGACTTCAAACAAGGCATCTTGTGC
TATCCAGCCCCCAAGGCCCATCCCGTGGCGGTTGCCAGCAAGAAGCGAAAGAAGCCTTCAAGGCCAGCCA
AGACTCGGAAACGTCAGGTTGGACCCCAGAGTGGTGAGGTCAGGAAGGAGGCCCCGAGGGATGAGACCAA
GGCTGACACTGACACAGCCCCAGCTTCATTCCCTGCTCCTGGGTGCTGTGAGAACTGTGGAATCAGCTTC
TCAGGGGATGGCACCCAAAGGCAGCGGCTCAAAACGTTGTGCAAAGACTGTCGAGCACAGAGAATTGCCT
TCAACCGGGAACAGAGAATGTTTAAGCGTGTGGGCTGTGGGGAGTGTGCAGCCTGCCAGGTAACAGAAGA
CTGTGGGGCCTGCTCCACCTGCCTCCTGCAGCTGCCCCATGATGTGGCATCGGGGCTGTTCTGCAAGTGT
GAACGGAGACGCTGCCTCCGGATTGTGGAAAGGAGCCGAGGGTGTGGAGTATGCCGGGGCTGTCAGACCC
AAGAGGATTGTGGCCATTGCCCCATCTGCCTTCGCCCTCCCCGCCCTGGTCTCAGGCGCCAGTGGAAATG
TGTCCAGCGACGTTGCCTACGGGGTAAACATGCCCGCCGCAAGGGAGGCTGTGACTCCAAGATGGCTGCC
AGGCGGCGCCCCGGAGCCCAGCCACTGCCTCCACCACCCCCATCACAGTCCCCAGAGCCCACAGAGCCGC
ACCCCAGAGCCCTGGCCCCCTCGCCACCTGCCGAGTTCATCTATTACTGTGTAGACGAGGACGAGCTACA
GCCCTACACGAACCGCCGGCAGAACCGCAAGTGCGGGGCCTGTGCAGCCTGCCTACGGCGGATGGACTGT
GGCCGCTGCGACTTCTGCTGCGACAAGCCCAAATTCGGGGGCAGCAACCAGAAGCGCCAGAAGTGTCGTT
GGCGCCAATGCCTGCAGTTTGCCATGAAGCGGCTGCTGCCCAGTGTCTGGTCAGAGTCTGAGGATGGGGC
AGGATCGCCCCCACCTTACCGTCGTCGAAAGAGGCCCAGCTCTGCCCGACGGCACCATCTTGGCCCTACC
TTGAAGCCCACCTTGGCTACACGCACAGCCCAACCAGACCATACCCAGGCTCCAACGAAGCAGGAAGCAG
GTGGTGGCTTTGTGCTGCCCCCGCCTGGCACTGACCTTGTGTTTTTACGGGAAGGCGCAAGCAGTCCTGT
GCAGGTGCCGGGCCCTGTTGCAGCTTCCACAGAAGCCCTGTTGCAGGAGGCCCAGTGCTCTGGCCTGAGT
TGGGTTGTGGCCTTACCCCAGGTGAAGCAAGAGAAGGCGGATACCCAGGACGAGTGGACACCAGGCACAG
CTGTCCTGACTTCTCCCGTATTGGTGCCTGGCTGCCCTAGCAAGGCAGTAGACCCAGGCCTGCCTTCTGT
GAAGCAAGAGCCACCTGACCCAGAGGAGGACAAGGAGGAGAACAAGGATGATTCTGCCTCCAAATTGGCC
CCAGAGGAAGAGGCAGGAGGGGCTGGCACACCCGTGATCACGGAGATTTTCAGCCTGGGTGGAACCCGCT
TCCGAGATACAGCAGTCTGGTTGCCAAGGTCCAAAGACCTTAAAAAACCTGGAGCTAGAAAGCAGTAG

Translation (605 aa):
MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQGILC
YPAPKAHPVAVASKKRKKPSRPAKTRKRQVGPQSGEVRKEAPRDETKADTDTAPASFPAPGCCENCGISF
SGDGTQRQRLKTLCKDCRAQRIAFNREQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKC
ERRRCLRIVERSRGCGVCRGCQTQEDCGHCPICLRPPRPGLRRQWKCVQRRCLRGKHARRKGGCDSKMAA
RRRPGAQPLPPPPPSQSPEPTEPHPRALAPSPPAEFIYYCVDEDELQPYTNRRQNRKCGACAACLRRMDC
GRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPT
LKPTLATRTAQPDHTQAPTKQEAGGGFVLPPPGTDLVFLREGASSPVQVPGPVAASTEALLQEAQCSGLS
WVVALPQVKQEKADTQDEWTPGTAVLTSPVLVPGCPSKAVDPGLPSVKQEPPDPEEDKEENKDDSASKLA
PEEEAGGAGTPVITEIFSLGGTRFRDTAVWLPRSKDLKKPGARKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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