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Report for CCDS11922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11922.1 Public Homo sapiens 18 SYT4 24 110 108 CCDS HistoryNCBI Gene:6860Re-query CCDS DB by CCDS ID:11922.1Re-query CCDS DB by GeneID:6860See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11922.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255224.8 ENSP00000255224.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000255224.8Link to Ensembl Protein Viewer:ENSP00000255224.2Re-query CCDS DB by Nucleotide ID:ENST00000255224Re-query CCDS DB by Protein ID:ENSP00000255224
Original member Current member NCBI NM_020783.4 NP_065834.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020783.4Link to Protein Sequence:NP_065834.1Re-query CCDS DB by Nucleotide ID:NM_020783Re-query CCDS DB by Protein ID:NP_065834Link to BLAST:NP_065834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065834.1 425 Q9H2B2-1 425 100% 0 0

Chromosomal Locations for CCDS 11922.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 43270341 43270648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43271712 43271832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43273580 43274394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43277248 43277281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGCTCCGATCACCACCAGCCGGGAAGAATTTGATGAAATCCCCACAGTGGTGGGGATCTTCAGTGCAT
TTGGCCTGGTCTTCACAGTCTCTCTCTTTGCATGGATCTGCTGTCAGAGAAAATCATCCAAGTCTAACAA
GACTCCTCCATACAAGTTTGTGCATGTGCTTAAGGGAGTTGATATTTACCCTGAAAACCTAAATAGCAAA
AAGAAGTTTGGAGCAGATGATAAAAATGAAGTAAAGAATAAGCCAGCTGTGCCAAAGAATTCATTGCATC
TGGATCTTGAAAAGAGAGATCTCAATGGCAATTTTCCCAAAACCAACCTCAAACCTGGCAGTCCTTCTGA
TCTGGAGAATGCAACCCCGAAGCTCTTTTTAGAAGGGGAAAAAGAGTCAGTTTCCCCTGAGAGTTTAAAG
TCCAGCACTTCCCTTACTTCAGAAGAGAAACAAGAGAAGCTGGGAACTCTCTTCTTCTCCTTAGAATACA
ACTTCGAGAGAAAAGCATTTGTGGTCAATATCAAGGAAGCCCGTGGCTTGCCAGCCATGGATGAGCAGTC
GATGACCTCTGACCCATATATCAAAATGACGATCCTCCCAGAGAAGAAGCATAAAGTGAAAACTAGAGTG
CTGAGAAAAACCTTGGATCCAGCTTTTGATGAGACCTTTACATTCTATGGGATACCCTACACCCAAATCC
AAGAATTGGCCTTGCACTTCACAATTTTGAGTTTTGACAGGTTTTCAAGAGATGATATCATTGGGGAAGT
TCTAATTCCTCTCTCGGGAATTGAATTATCTGAAGGAAAAATGTTAATGAATAGAGAGATCATCAAGAGA
AATGTTAGGAAGTCTTCAGGACGGGGTGAGTTACTGATCTCTCTCTGCTATCAGTCCACCACAAACACTC
TAACTGTGGTTGTCTTAAAAGCTCGACATCTGCCTAAATCTGATGTGTCCGGACTTTCAGATCCCTATGT
CAAAGTGAACCTGTACCATGCCAAAAAGAGAATCTCCAAGAAGAAGACTCATGTGAAGAAATGCACCCCC
AATGCAGTGTTCAATGAGCTGTTTGTCTTTGATATTCCTTGTGAGGGCCTTGAAGATATAAGTGTTGAAT
TTTTGGTTTTGGATTCTGAAAGGGGGTCCCGAAATGAGGTAATCGGGCAGTTAGTCTTGGGTGCAGCAGC
AGAAGGAACTGGTGGAGAGCACTGGAAAGAGATCTGTGACTACCCCAGGAGACAAATTGCCAAGTGGCAC
GTGCTCTGTGATGGTTAG

Translation (425 aa):
MAPITTSREEFDEIPTVVGIFSAFGLVFTVSLFAWICCQRKSSKSNKTPPYKFVHVLKGVDIYPENLNSK
KKFGADDKNEVKNKPAVPKNSLHLDLEKRDLNGNFPKTNLKPGSPSDLENATPKLFLEGEKESVSPESLK
SSTSLTSEEKQEKLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV
LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIKR
NVRKSSGRGELLISLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTP
NAVFNELFVFDIPCEGLEDISVEFLVLDSERGSRNEVIGQLVLGAAAEGTGGEHWKEICDYPRRQIAKWH
VLCDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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