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Report for CCDS11905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11905.1 Public Homo sapiens 18 GAREM1 24 110 108 CCDS HistoryNCBI Gene:64762Re-query CCDS DB by CCDS ID:11905.1Re-query CCDS DB by GeneID:64762See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399218.8 ENSP00000382165.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399218.8Link to Ensembl Protein Viewer:ENSP00000382165.3Re-query CCDS DB by Nucleotide ID:ENST00000399218Re-query CCDS DB by Protein ID:ENSP00000382165
Original member Current member NCBI NM_022751.3 NP_073588.1 Accepted alive Link to Nucleotide Sequence:NM_022751.3Link to Protein Sequence:NP_073588.1Re-query CCDS DB by Nucleotide ID:NM_022751Re-query CCDS DB by Protein ID:NP_073588Link to BLAST:NP_073588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073588.1 875 Q9H706-3 875 100% 0 0

Chromosomal Locations for CCDS 11905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32267871 32268765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32270217 32270383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32287031 32288203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32310193 32310323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32392895 32393035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32470308 32470428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGACCCGGCGCCCTCGCTGGGCTGCAGCCTCAAGGATGTGAAGTGGAGCTCGGTGGCCGTGCCGCTCG
ACCTCCTGGTCAGCACTTACCGGCTGCCCCAGATCGCGCGCCTGGACAACGGAGAGTGCGTAGAAGGGCT
GCGGGAAAATGACTATCTGCTGATTCATTCCTGCCGCCAGTGGACCACCATCACTGCCCACAGCTTGGAG
GAGGGTCACTATGTCATTGGGCCAAAGATAGAGATTCCGGTACATTATGCAGGGCAATTCAAGCTGCTGG
AACAAGACCGAGATATAAAGGAGCCAGTGCAATATTTCAACAGTGTGGAGGAGGTGGCTAAGGCATTTCC
TGAACGCGTGTACGTCATGGAGGATATCACATTCAACGTGAAGGTTGCTTCAGGTGAATGCAATGAAGAC
ACTGAAGTTTACAACATCACCCTGTGTACTGGGGATGAACTCACTCTAATGGGGCAGGCAGAAATCCTTT
ATGCAAAGACATTCAAGGAAAAGTCACGACTCAACACAATCTTCAAAAAGATTGGGAAGCTCAATTCCAT
CAGCAAGCTGGGAAAAGGCAAAATGCCGTGCCTCATTTGTATGAATCACCGGACCAACGAAAGCATTAGC
CTTCCATTCCAGTGCAAGGGCAGATTTAGCACCCGAAGTCCCCTGGAACTTCAGATGCAAGAGGGCGAAC
ACACCATCCGCAACATTGTGGAGAAAACCAGGCTTCCTGTGAATGTGACTGTGCCAAGCCCTCCACCGAG
AAACCCATACGACCTCCACTTCATCCGTGAGGGGCACCGCTATAAGTTTGTGAACATCCAGACCAAGACG
GTGGTGGTTTGCTGTGTGCTGCGGAACAACAAGATCCTCCCCATGCACTTTCCTTTGCACTTGACTGTCC
CCAAGTTCAGCCTCCCAGAACACCTGGTGAAGGGAGAGAGCTGGCCCGAAACCCTGGTCCATCACTGGCT
AGGTATCTGCCAAGAACAGTTCGACATCGATGAGTATTCACGGGCTGTCCGTGATGTGAAAACCGACTGG
AATGAAGAATGCAAGAGCCCCAAGAAGGGTCGGTGCTCTGGCCACAACCACGTGCCCAATTCGCTCAGCT
ACGCCCGCGATGAGCTCACCCAGTCCTTCCACCGACTCTCGGTCTGTGTGTATGGCAACAATCTCCATGG
CAACAGTGAGGTGAACCTTCATGGTTGCAGGGACCTGGGGGGAGATTGGGCTCCCTTTCCTCATGACATC
CTGCCCTATCAGGACTCTGGAGATAGTGGGAGCGACTACCTTTTCCCAGAAGCTAGTGAAGAATCAGCAG
GCATCCCGGGAAAGTCAGAACTTCCCTACGAAGAGCTGTGGCTGGAGGAAGGCAAGCCCAGCCATCAGCC
TCTCACTCGCTCTCTGAGCGAGAAGAACAGATGTGATCAGTTTAGAGGTTCTGTCCGATCCAAATGTGCG
ACTTCTCCTCTTCCCATCCCTGGGACTCTGGGAGCAGCAGTGAAGTCTTCAGATACTGCCCTACCTCCAC
CTCCAGTGCCTCCCAAATCTGAAGCCGTCAGAGAAGAATGCCGGCTCCTGAACGCCCCACCTGTTCCACC
CCGAAGCGCAAAGCCTTTGTCCACCAGTCCCTCCATCCCTCCTCGCACAGTCAAGCCAGCGCGGCAACAG
ACTCGCTCTCCCAGCCCCACCTTGTCCTACTATTCTTCAGGGCTACACAACATCGTCACTAAAACTGACA
CAAATCCTTCTGAAAGCACTCCTGTTTCCTGCTATCCATGTAACCGAGTGAAAACTGATTCTGTGGACCT
GAAATCCCCGTTTGGAAGTCCTTCTGCTGAAGCTGTGTCCTCTCGGCTCTCATGGCCTAACCATTATTCA
GGAGCATCAGAAAGCCAGACCAGGAGTGACTTCCTGCTGGATCCAAGCAGGAGTTATAGTTACCCTAGAC
AAAAGACGCCAGGCACACCAAAGAGAAACTGCCCAGCACCTTTTGATTTTGATGGCTGTGAGCTCCTGGC
CAGCCCCACTAGCCCAGTCACTGCAGAATTCAGTAGCAGCGTCTCTGGTTGTCCCAAGTCAGCCAGCTAC
TCTCTGGAGAGCACAGATGTGAAATCTCTTGCAGCTGGTGTGACAAAGCAGAGTACGTCATGCCCTGCCT
TACCCCCCAGGGCTCCAAAACTAGTGGAAGAGAAGGTCGCCTCCGAAACATCTCCTTTGCCTCTGAAAAT
TGATGGTGCTGAGGAAGACCCCAAGTCTGGGTCACCAGATCTCTCGGAGGACCAGTATTTTGTTAAAAAG
GGCATGCAGGACATCTTCTCTGCCTCCTACCCTTTCTCATCTCCGCTCCATCTCCAGCTGGCCCCCAGAT
CCTGTGGCGACGGTTCCCCATGGCAGCCACCTGCTGACCTATCAGGACTCTCTATAGAGGAAGTGTCCAA
GTCACTACGGTTCATTGGTTTGTCCGAAGATGTCATATCATTCTTTGTTACTGAAAAGATTGATGGGAAC
CTGCTTGTTCAGCTAACGGAAGAAATCCTCTCAGAGGATTTCAAATTGAGCAAATTGCAGGTGAAGAAGA
TAATGCAATTCATTAATGGCTGGAGGCCCAAAATATAG

Translation (875 aa):
MDPAPSLGCSLKDVKWSSVAVPLDLLVSTYRLPQIARLDNGECVEGLRENDYLLIHSCRQWTTITAHSLE
EGHYVIGPKIEIPVHYAGQFKLLEQDRDIKEPVQYFNSVEEVAKAFPERVYVMEDITFNVKVASGECNED
TEVYNITLCTGDELTLMGQAEILYAKTFKEKSRLNTIFKKIGKLNSISKLGKGKMPCLICMNHRTNESIS
LPFQCKGRFSTRSPLELQMQEGEHTIRNIVEKTRLPVNVTVPSPPPRNPYDLHFIREGHRYKFVNIQTKT
VVVCCVLRNNKILPMHFPLHLTVPKFSLPEHLVKGESWPETLVHHWLGICQEQFDIDEYSRAVRDVKTDW
NEECKSPKKGRCSGHNHVPNSLSYARDELTQSFHRLSVCVYGNNLHGNSEVNLHGCRDLGGDWAPFPHDI
LPYQDSGDSGSDYLFPEASEESAGIPGKSELPYEELWLEEGKPSHQPLTRSLSEKNRCDQFRGSVRSKCA
TSPLPIPGTLGAAVKSSDTALPPPPVPPKSEAVREECRLLNAPPVPPRSAKPLSTSPSIPPRTVKPARQQ
TRSPSPTLSYYSSGLHNIVTKTDTNPSESTPVSCYPCNRVKTDSVDLKSPFGSPSAEAVSSRLSWPNHYS
GASESQTRSDFLLDPSRSYSYPRQKTPGTPKRNCPAPFDFDGCELLASPTSPVTAEFSSSVSGCPKSASY
SLESTDVKSLAAGVTKQSTSCPALPPRAPKLVEEKVASETSPLPLKIDGAEEDPKSGSPDLSEDQYFVKK
GMQDIFSASYPFSSPLHLQLAPRSCGDGSPWQPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGN
LLVQLTEEILSEDFKLSKLQVKKIMQFINGWRPKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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