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Report for CCDS11900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11900.1 Public Homo sapiens 18 B4GALT6 24 110 108 CCDS HistoryNCBI Gene:9331Re-query CCDS DB by CCDS ID:11900.1Re-query CCDS DB by GeneID:9331See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306851.10 ENSP00000306459.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306851.10Link to Ensembl Protein Viewer:ENSP00000306459.5Re-query CCDS DB by Nucleotide ID:ENST00000306851Re-query CCDS DB by Protein ID:ENSP00000306459
Original member Current member NCBI NM_004775.5 NP_004766.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004775.5Link to Protein Sequence:NP_004766.2Re-query CCDS DB by Nucleotide ID:NM_004775Re-query CCDS DB by Protein ID:NP_004766Link to BLAST:NP_004766.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004766.2 382 Q9UBX8-1 382 100% 0 0

Chromosomal Locations for CCDS 11900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31625614 31625761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31626283 31626384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31626999 31627121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31630959 31631146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31638644 31638760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31645355 31645479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31657976 31658089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31666256 31666372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31684312 31684426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGTCTGTGCTCAGGCGGATGATGCGGGTTTCCAATCGCTCTCTCCTCGCCTTCATCTTCTTCTTCTCCC
TCTCTTCGTCCTGTCTGTACTTCATCTATGTGGCCCCAGGCATCGCCAACACATATCTCTTTATGGTACA
AGCTCGAGGTATAATGTTGAGAGAAAATGTGAAAACAATAGGTCATATGATCAGGCTGTACACAAATAAA
AACAGTACGCTCAACGGTACAGATTATCCCGAAGGCAATAATTCAAGTGATTATCTTGTTCAAACAACAA
CGTATCTCCCGGAAAACTTCACATACTCACCATACCTCCCCTGTCCAGAAAAGCTGCCTTATATGCGAGG
ATTCCTCAATGTCAATGTAAGCGAAGTCAGTTTTGATGAAATTCATCAACTCTTCTCCAAGGATTTAGAT
ATTGAGCCAGGGGGTCATTGGAGGCCAAAAGACTGTAAACCCAGATGGAAGGTGGCAGTTCTCATTCCTT
TCCGTAATCGCCATGAACATCTTCCAATTTTTTTCTTACATCTGATTCCAATGCTCCAGAAGCAGCGGCT
GGAATTTGCGTTTTATGTCATTGAACAGACTGGCACACAACCTTTTAACCGTGCGATGCTTTTCAATGTG
GGCTTCAAAGAGGCCATGAAAGACAGTGTCTGGGACTGTGTAATCTTCCACGATGTGGATCATCTACCTG
AAAATGACCGGAACTATTACGGATGTGGAGAAATGCCACGTCATTTTGCTGCAAAGCTGGATAAATACAT
GTATATTCTTCCATATAAAGAATTTTTTGGTGGTGTAAGTGGGCTGACAGTGGAACAATTTAGAAAGATC
AATGGTTTTCCTAATGCCTTCTGGGGATGGGGAGGAGAAGATGATGACCTTTGGAACAGAGTTCACTATG
CTGGATATAATGTAACCAGACCAGAGGGAGACTTAGGAAAATACAAGTCAATTCCTCATCACCATAGAGG
TGAAGTCCAGTTTTTAGGACGGTATAAATTACTAAGGTATTCCAAGGAGCGTCAGTACATCGATGGACTG
AACAATTTAATATATAGGCCAAAAATACTGGTTGATAGGTTGTATACAAACATATCTGTAAACCTCATGC
CAGAGTTAGCTCCAATCGAAGACTATTAA

Translation (382 aa):
MSVLRRMMRVSNRSLLAFIFFFSLSSSCLYFIYVAPGIANTYLFMVQARGIMLRENVKTIGHMIRLYTNK
NSTLNGTDYPEGNNSSDYLVQTTTYLPENFTYSPYLPCPEKLPYMRGFLNVNVSEVSFDEIHQLFSKDLD
IEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLPIFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNV
GFKEAMKDSVWDCVIFHDVDHLPENDRNYYGCGEMPRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKI
NGFPNAFWGWGGEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYIDGL
NNLIYRPKILVDRLYTNISVNLMPELAPIEDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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