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Report for CCDS11888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11888.1 Public Homo sapiens 18 KCTD1 24 110 108 CCDS HistoryNCBI Gene:284252Re-query CCDS DB by CCDS ID:11888.1Re-query CCDS DB by GeneID:284252See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317932.11 ENSP00000314831.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317932.11Link to Ensembl Protein Viewer:ENSP00000314831.7Re-query CCDS DB by Nucleotide ID:ENST00000317932Re-query CCDS DB by Protein ID:ENSP00000314831
Original member Current member EBI ENST00000408011.7 ENSP00000384367.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000408011.7Link to Ensembl Protein Viewer:ENSP00000384367.3Re-query CCDS DB by Nucleotide ID:ENST00000408011Re-query CCDS DB by Protein ID:ENSP00000384367
Original member Current member EBI ENST00000417602.5 ENSP00000408405.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417602.5Link to Ensembl Protein Viewer:ENSP00000408405.2Re-query CCDS DB by Nucleotide ID:ENST00000417602Re-query CCDS DB by Protein ID:ENSP00000408405
Original member Current member EBI ENST00000579973.5 ENSP00000464170.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000579973.5Link to Ensembl Protein Viewer:ENSP00000464170.1Re-query CCDS DB by Nucleotide ID:ENST00000579973Re-query CCDS DB by Protein ID:ENSP00000464170
Original member Current member NCBI NM_001136205.2 NP_001129677.1 Accepted alive Link to Nucleotide Sequence:NM_001136205.2Link to Protein Sequence:NP_001129677.1Re-query CCDS DB by Nucleotide ID:NM_001136205Re-query CCDS DB by Protein ID:NP_001129677Link to BLAST:NP_001129677.1
Original member Current member NCBI NM_001258221.2 NP_001245150.1 Accepted alive Link to Nucleotide Sequence:NM_001258221.2Link to Protein Sequence:NP_001245150.1Re-query CCDS DB by Nucleotide ID:NM_001258221Re-query CCDS DB by Protein ID:NP_001245150Link to BLAST:NP_001245150.1
Original member Current member NCBI NM_001351443.1 NP_001338372.1 Accepted alive Link to Nucleotide Sequence:NM_001351443.1Link to Protein Sequence:NP_001338372.1Re-query CCDS DB by Nucleotide ID:NM_001351443Re-query CCDS DB by Protein ID:NP_001338372Link to BLAST:NP_001338372.1
Original member Current member NCBI NM_198991.4 NP_945342.1 Accepted alive Link to Nucleotide Sequence:NM_198991.4Link to Protein Sequence:NP_945342.1Re-query CCDS DB by Nucleotide ID:NM_198991Re-query CCDS DB by Protein ID:NP_945342Link to BLAST:NP_945342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129677.1 257 Q719H9 257 100% 0 0
NP_001245150.1 257 Q719H9 257 100% 0 0
NP_001338372.1 257 Q719H9 257 100% 0 0
NP_945342.1 257 Q719H9 257 100% 0 0

Chromosomal Locations for CCDS 11888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26455743 26455901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26459620 26459925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26476515 26476659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26501072 26501235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGTCAAGACCTCTGATCACTAGATCCCCTGCATCTCCACTGAACAACCAAGGCATCCCTACTCCAGCAC
AACTCACAAAATCCAATGCGCCTGTCCACATTGATGTGGGCGGCCACATGTACACCAGCAGCCTGGCCAC
CCTCACCAAATACCCTGAATCCAGAATCGGAAGACTTTTTGATGGTACAGAGCCCATTGTTTTGGACAGT
CTCAAACAGCACTATTTCATTGACAGAGATGGACAGATGTTCAGATATATCTTGAATTTTCTACGAACAT
CCAAACTCCTCATTCCTGATGATTTCAAGGACTACACTTTGTTATATGAAGAGGCAAAATATTTTCAGCT
TCAGCCCATGTTGTTGGAGATGGAAAGATGGAAGCAGGACAGAGAAACTGGTCGATTTTCAAGGCCCTGT
GAGTGCCTCGTCGTGCGTGTGGCCCCAGACCTCGGAGAAAGGATCACGCTAAGCGGTGACAAATCCTTGA
TAGAAGAAGTATTTCCAGAGATCGGCGACGTGATGTGTAACTCTGTCAATGCAGGCTGGAATCACGACTC
GACGCACGTCATCAGGTTTCCACTAAATGGCTACTGTCACCTCAACTCAGTCCAGGTCCTCGAGAGGTTG
CAGCAAAGAGGATTTGAAATCGTGGGCTCCTGTGGGGGAGGAGTAGACTCGTCCCAGTTCAGCGAATACG
TCCTTCGGCGGGAACTGAGGCGGACGCCCCGTGTACCCTCCGTCATCCGGATAAAGCAAGAGCCTCTGGA
CTAA

Translation (257 aa):
MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDS
LKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRETGRFSRPC
ECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNAGWNHDSTHVIRFPLNGYCHLNSVQVLERL
QQRGFEIVGSCGGGVDSSQFSEYVLRRELRRTPRVPSVIRIKQEPLD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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