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Report for CCDS11844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11844.1 Public Homo sapiens 18 TWSG1 24 110 108 CCDS HistoryNCBI Gene:57045Re-query CCDS DB by CCDS ID:11844.1Re-query CCDS DB by GeneID:57045See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11844.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262120.10 ENSP00000262120.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262120.10Link to Ensembl Protein Viewer:ENSP00000262120.5Re-query CCDS DB by Nucleotide ID:ENST00000262120Re-query CCDS DB by Protein ID:ENSP00000262120
Original member Current member NCBI NM_020648.6 NP_065699.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020648.6Link to Protein Sequence:NP_065699.1Re-query CCDS DB by Nucleotide ID:NM_020648Re-query CCDS DB by Protein ID:NP_065699Link to BLAST:NP_065699.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065699.1 223 Q9GZX9-1 223 100% 0 0

Chromosomal Locations for CCDS 11844.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 9337230 9337352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9359972 9360071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9396280 9396546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 9399346 9399527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGAAGTTACACTATGTTGCTGTGCTTACTCTAGCCATCCTGATGTTCCTGACATGGCTTCCAGAATCAC
TGAGCTGTAACAAAGCACTCTGTGCTAGTGATGTGAGCAAATGCCTCATTCAGGAGCTCTGCCAGTGCCG
GCCGGGAGAAGGCAATTGCTCCTGCTGTAAGGAGTGCATGCTGTGTCTTGGGGCCCTTTGGGACGAGTGC
TGTGACTGTGTTGGTATGTGTAATCCTCGAAATTATAGTGACACACCTCCAACTTCAAAGAGCACAGTGG
AGGAGCTGCATGAACCGATCCCTTCTCTCTTCCGGGCACTCACAGAAGGAGATACTCAGTTGAATTGGAA
CATCGTTTCTTTCCCTGTTGCAGAAGAACTTTCACATCATGAGAATCTGGTTTCATTTTTAGAAACTGTG
AACCAGCCACACCACCAGAATGTGTCTGTCCCCAGCAATAATGTTCACGCGCCTTATTCCAGTGACAAAG
AACACATGTGTACTGTGGTTTATTTTGATGACTGCATGTCCATACATCAGTGTAAAATATCCTGTGAGTC
CATGGGAGCATCCAAATATCGCTGGTTTCATAATGCCTGCTGCGAGTGCATTGGTCCAGAATGTATTGAC
TATGGTAGTAAAACTGTCAAATGTATGAACTGCATGTTTTAA

Translation (223 aa):
MKLHYVAVLTLAILMFLTWLPESLSCNKALCASDVSKCLIQELCQCRPGEGNCSCCKECMLCLGALWDEC
CDCVGMCNPRNYSDTPPTSKSTVEELHEPIPSLFRALTEGDTQLNWNIVSFPVAEELSHHENLVSFLETV
NQPHHQNVSVPSNNVHAPYSSDKEHMCTVVYFDDCMSIHQCKISCESMGASKYRWFHNACCECIGPECID
YGSKTVKCMNCMF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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