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Report for CCDS11699.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11699.2 Public Homo sapiens 17 GPRC5C 24 110 108 CCDS HistoryNCBI Gene:55890Re-query CCDS DB by CCDS ID:11699.2Re-query CCDS DB by GeneID:55890See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11699.1
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11699.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392627.7 ENSP00000376403.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392627.7Link to Ensembl Protein Viewer:ENSP00000376403.2Re-query CCDS DB by Nucleotide ID:ENST00000392627Re-query CCDS DB by Protein ID:ENSP00000376403
Original member Current member EBI ENST00000392629.3 ENSP00000376405.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392629.3Link to Ensembl Protein Viewer:ENSP00000376405.3Re-query CCDS DB by Nucleotide ID:ENST00000392629Re-query CCDS DB by Protein ID:ENSP00000376405
Original member Current member NCBI NM_001366262.2 NP_001353191.1 Accepted alive Link to Nucleotide Sequence:NM_001366262.2Link to Protein Sequence:NP_001353191.1Re-query CCDS DB by Nucleotide ID:NM_001366262Re-query CCDS DB by Protein ID:NP_001353191Link to BLAST:NP_001353191.1
Original member Current member NCBI NM_018653.5 NP_061123.4 Accepted alive Link to Nucleotide Sequence:NM_018653.5Link to Protein Sequence:NP_061123.4Re-query CCDS DB by Nucleotide ID:NM_018653Re-query CCDS DB by Protein ID:NP_061123Link to BLAST:NP_061123.4
Original member Current member NCBI NM_022036.4 NP_071319.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022036.4Link to Protein Sequence:NP_071319.3Re-query CCDS DB by Nucleotide ID:NM_022036Re-query CCDS DB by Protein ID:NP_071319Link to BLAST:NP_071319.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353191.1 441 Q9NQ84-1 441 100% 0 0
NP_061123.4 441 Q9NQ84-1 441 100% 0 0
NP_071319.3 441 Q9NQ84-1 441 100% 0 0

Chromosomal Locations for CCDS 11699.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74439777 74440827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74443818 74443912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74446849 74447028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGCCATCCACAAAGCCTTGGTGATGTGCCTGGGACTGCCTCTCTTCCTGTTCCCAGGGGCCTGGGCCC
AGGGCCATGTCCCACCCGGCTGCAGCCAAGGCCTCAACCCCCTGTACTACAACCTGTGTGACCGCTCTGG
GGCGTGGGGCATCGTCCTGGAGGCCGTGGCTGGGGCGGGCATTGTCACCACGTTTGTGCTCACCATCATC
CTGGTGGCCAGCCTCCCCTTTGTGCAGGACACCAAGAAACGGAGCCTGCTGGGGACCCAGGTATTCTTCC
TTCTGGGGACCCTGGGCCTCTTCTGCCTCGTGTTTGCCTGTGTGGTGAAGCCCGACTTCTCCACCTGTGC
CTCTCGGCGCTTCCTCTTTGGGGTTCTGTTCGCCATCTGCTTCTCTTGTCTGGCGGCTCACGTCTTTGCC
CTCAACTTCCTGGCCCGGAAGAACCACGGGCCCCGGGGCTGGGTGATCTTCACTGTGGCTCTGCTGCTGA
CCCTGGTAGAGGTCATCATCAATACAGAGTGGCTGATCATCACCCTGGTTCGGGGCAGTGGCGAGGGCGG
CCCTCAGGGCAACAGCAGCGCAGGCTGGGCCGTGGCCTCCCCCTGTGCCATCGCCAACATGGACTTTGTC
ATGGCACTCATCTACGTCATGCTGCTGCTGCTGGGTGCCTTCCTGGGGGCCTGGCCCGCCCTGTGTGGCC
GCTACAAGCGCTGGCGTAAGCATGGGGTCTTTGTGCTCCTCACCACAGCCACCTCCGTTGCCATATGGGT
GGTGTGGATCGTCATGTATACTTACGGCAACAAGCAGCACAACAGTCCCACCTGGGATGACCCCACGCTG
GCCATCGCCCTCGCCGCCAATGCCTGGGCCTTCGTCCTCTTCTACGTCATCCCCGAGGTCTCCCAGGTGA
CCAAGTCCAGCCCAGAGCAAAGCTACCAGGGGGACATGTACCCCACCCGGGGCGTGGGCTATGAGACCAT
CCTGAAAGAGCAGAAGGGTCAGAGCATGTTCGTGGAGAACAAGGCCTTTTCCATGGATGAGCCGGTTGCA
GCTAAGAGGCCGGTGTCACCATACAGCGGGTACAATGGGCAGCTGCTGACCAGTGTGTACCAGCCCACTG
AGATGGCCCTGATGCACAAAGTTCCGTCCGAAGGAGCTTACGACATCATCCTCCCACGGGCCACCGCCAA
CAGCCAGGTGATGGGCAGTGCCAACTCGACCCTGCGGGCTGAAGACATGTACTCGGCCCAGAGCCACCAG
GCGGCCACACCGCCGAAAGACGGCAAGAACTCTCAGGTCTTTAGAAACCCCTACGTGTGGGACTGA

Translation (441 aa):
MAIHKALVMCLGLPLFLFPGAWAQGHVPPGCSQGLNPLYYNLCDRSGAWGIVLEAVAGAGIVTTFVLTII
LVASLPFVQDTKKRSLLGTQVFFLLGTLGLFCLVFACVVKPDFSTCASRRFLFGVLFAICFSCLAAHVFA
LNFLARKNHGPRGWVIFTVALLLTLVEVIINTEWLIITLVRGSGEGGPQGNSSAGWAVASPCAIANMDFV
MALIYVMLLLLGAFLGAWPALCGRYKRWRKHGVFVLLTTATSVAIWVVWIVMYTYGNKQHNSPTWDDPTL
AIALAANAWAFVLFYVIPEVSQVTKSSPEQSYQGDMYPTRGVGYETILKEQKGQSMFVENKAFSMDEPVA
AKRPVSPYSGYNGQLLTSVYQPTEMALMHKVPSEGAYDIILPRATANSQVMGSANSTLRAEDMYSAQSHQ
AATPPKDGKNSQVFRNPYVWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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