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Report for CCDS11644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11644.1 Public Homo sapiens 17 FTSJ3 24 110 108 CCDS HistoryNCBI Gene:117246Re-query CCDS DB by CCDS ID:11644.1Re-query CCDS DB by GeneID:117246See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427159.7 ENSP00000396673.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427159.7Link to Ensembl Protein Viewer:ENSP00000396673.2Re-query CCDS DB by Nucleotide ID:ENST00000427159Re-query CCDS DB by Protein ID:ENSP00000396673
Original member Current member NCBI NM_017647.4 NP_060117.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017647.4Link to Protein Sequence:NP_060117.3Re-query CCDS DB by Nucleotide ID:NM_017647Re-query CCDS DB by Protein ID:NP_060117Link to BLAST:NP_060117.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060117.3 847 Q8IY81 847 100% 0 0

Chromosomal Locations for CCDS 11644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63819802 63819994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63820079 63820173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63820255 63820438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63820839 63820938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63821030 63821115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63821354 63821643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63821723 63821843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63821984 63822168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63823817 63823952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63824084 63824239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63824331 63824411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63824637 63824737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63824825 63824929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63825048 63825163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63825242 63825436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63825536 63825635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63826056 63826135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63826258 63826304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63826567 63826672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63826836 63826902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGGGCAAGAAGGGCAAAGTTGGCAAGAGCCGACGAGACAAGTTTTATCACTTGGCGAAGGAGACGGGTT
ACCGTTCCCGATCTGCTTTCAAGCTGATCCAGCTCAATCGCCGCTTTCAGTTCCTGCAGAAAGCCCGAGC
CTTGCTGGACCTGTGTGCTGCGCCAGGGGGATGGCTGCAGGTAGCTGCCAAGTTTATGCCTGTATCCAGC
CTTATTGTGGGAGTGGACCTGGTTCCAATCAAGCCTCTCCCCAATGTGGTGACTCTCCAGCAGGACATCA
CAACAGAACGTTGTAGGCAGGCCCTGAGGAAGGAGCTGAAGACCTGGAAGGTTGATGTTGTGCTCAATGA
TGGGGCCCCCAACGTTGGGGCTAGCTGGGTCCATGATGCTTACTCACAAGCCCATTTGACACTGATGGCT
CTACGTTTGGCTTGTGACTTTTTGGCCCGTGGTGGCAGCTTCATCACAAAGGTTTTCCGTTCTCGTGACT
ATCAGCCTCTGCTATGGATCTTTCAGCAGCTGTTCCGCCGTGTCCAGGCCACCAAGCCCCAAGCCTCTCG
CCATGAATCTGCAGAGATCTTTGTAGTCTGCCAAGGATTCCTGGCCCCTGACAAGGTTGACAGTAAATTC
TTTGACCCCAAATTTGCCTTTAAGGAGGTTGAAGTTCAGGCTAAGACCGTTACTGAATTGGTTACTAAGA
AGAAGCCAAAGGCTGAAGGCTATGCTGAGGGTGACCTCACTCTCTATCACCGTACCTCAGTCACTGACTT
CCTCCGAGCTGCCAACCCTGTTGACTTCCTCTCCAAGGCCAGCGAAATCATGGTAGATGATGAAGAGTTG
GCACAGCATCCAGCTACCACTGAGGACATACGGGTGTGCTGTCAGGACATCAGAGTGTTGGGGCGCAAGG
AGCTCAGGTCGCTACTAAACTGGAGAACAAAACTTCGGCGATATGTGGCCAAGAAGCTGAAAGAACAAGC
AAAGGCACTGGACATCAGCCTCAGCTCTGGAGAGGAAGATGAAGGTGATGAGGAGGACTCAACAGCTGGA
ACCACAAAGCAGCCCTCTAAGGAGGAGGAGGAAGAGGAGGAGGAGGAACAACTGAACCAGACCTTGGCAG
AAATGAAGGCCCAGGAGGTGGCGGAATTGAAGAGGAAGAAAAAGAAGCTGTTGCGTGAGCAGAGAAAGCA
GCGGGAGCGTGTGGAGCTGAAGATGGATCTGCCTGGGGTTTCCATTGCAGACGAGGGGGAGACTGGCATG
TTCTCCTTGAGCACCATCCGGGGTCACCAGTTATTAGAGGAAGTAACACAAGGGGATATGAGTGCAGCAG
ACACATTTCTGTCCGATCTGCCAAGGGATGATATCTATGTGTCAGATGTTGAGGACGACGGTGATGACAC
ATCTCTGGATAGTGACCTGGATCCAGAGGAGCTGGCAGGAGTCAGGGGACATCAGGGTCTAAGGGACCAA
AAGCGTATGCGACTTACTGAAGTGCAAGATGATAAAGAGGAGGAGGAGGAGGAGAATCCACTGCTGGTAC
CACTGGAGGAAAAGGCAGTACTGCAGGAAGAACAAGCCAACCTGTGGTTCTCAAAGGGCAGCTTTGCTGG
GATCGAGGACGATGCCGATGAGGCCCTGGAGATCAGTCAGGCCCAGCTGTTATTTGAGAACCGGCGGAAG
GGACGGCAGCAGCAGCAGAAGCAGCAGCTGCCACAGACACCCCCTTCCTGTTTGAAGACTGAGATAATGT
CTCCCCTGTACCAAGATGAAGCCCCTAAGGGAACAGAGGCTTCTTCGGGGACAGAAGCTGCCACTGGCCT
TGAAGGGGAAGAAAAGGATGGCATCTCAGACAGTGATAGCAGTACTAGCAGTGAGGAAGAAGAGAGCTGG
GAACCCCTCCGTGGTAAGAAGCGAAGCCGTGGGCCTAAGTCAGATGATGACGGGTTTGAGATAGTGCCTA
TTGAGGACCCAGCGAAACATCGGATACTGGACCCCGAAGGCCTTGCTCTAGGTGCTGTTATTGCCTCTTC
CAAAAAGGCCAAGAGAGACCTCATAGATAACTCCTTCAACCGGTACACATTTAATGAGGATGAGGGGGAG
CTTCCGGAGTGGTTTGTGCAAGAGGAAAAGCAGCACCGGATACGACAGTTGCCTGTTGGTAAGAAGGAGG
TGGAGCATTACCGGAAACGCTGGCGGGAAATCAATGCACGTCCCATCAAGAAGGTGGCTGAGGCTAAGGC
TAGAAAGAAAAGGAGGATGCTGAAGAGGCTGGAGCAGACCAGGAAGAAGGCAGAAGCCGTGGTGAACACA
GTGGACATCTCAGAACGAGAGAAAGTGGCACAGCTGCGAAGTCTCTACAAGAAGGCTGGGCTTGGCAAGG
AGAAACGCCATGTCACCTACGTTGTAGCCAAAAAAGGTGTGGGCCGCAAAGTGCGCCGGCCAGCTGGAGT
CAGAGGTCATTTCAAGGTGGTGGACTCAAGGATGAAGAAGGACCAAAGAGCACAGCAACGTAAGGAACAA
AAGAAAAAACACAAACGGAAGTAA

Translation (847 aa):
MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSS
LIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMA
LRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKF
FDPKFAFKEVEVQAKTVTELVTKKKPKAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEEL
AQHPATTEDIRVCCQDIRVLGRKELRSLLNWRTKLRRYVAKKLKEQAKALDISLSSGEEDEGDEEDSTAG
TTKQPSKEEEEEEEEEQLNQTLAEMKAQEVAELKRKKKKLLREQRKQRERVELKMDLPGVSIADEGETGM
FSLSTIRGHQLLEEVTQGDMSAADTFLSDLPRDDIYVSDVEDDGDDTSLDSDLDPEELAGVRGHQGLRDQ
KRMRLTEVQDDKEEEEEENPLLVPLEEKAVLQEEQANLWFSKGSFAGIEDDADEALEISQAQLLFENRRK
GRQQQQKQQLPQTPPSCLKTEIMSPLYQDEAPKGTEASSGTEAATGLEGEEKDGISDSDSSTSSEEEESW
EPLRGKKRSRGPKSDDDGFEIVPIEDPAKHRILDPEGLALGAVIASSKKAKRDLIDNSFNRYTFNEDEGE
LPEWFVQEEKQHRIRQLPVGKKEVEHYRKRWREINARPIKKVAEAKARKKRRMLKRLEQTRKKAEAVVNT
VDISEREKVAQLRSLYKKAGLGKEKRHVTYVVAKKGVGRKVRRPAGVRGHFKVVDSRMKKDQRAQQRKEQ
KKKHKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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