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Report for CCDS11627.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11627.2 Public Homo sapiens 17 TBX2 24 110 108 CCDS HistoryNCBI Gene:6909Re-query CCDS DB by CCDS ID:11627.2Re-query CCDS DB by GeneID:6909See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11627.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11627.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240328.4 ENSP00000240328.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240328.4Link to Ensembl Protein Viewer:ENSP00000240328.3Re-query CCDS DB by Nucleotide ID:ENST00000240328Re-query CCDS DB by Protein ID:ENSP00000240328
Original member Current member NCBI NM_005994.4 NP_005985.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005994.4Link to Protein Sequence:NP_005985.3Re-query CCDS DB by Nucleotide ID:NM_005994Re-query CCDS DB by Protein ID:NP_005985Link to BLAST:NP_005985.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005985.3 712 Q13207 712 100% 0 0

Chromosomal Locations for CCDS 11627.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 61400177 61400571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 61401684 61401951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 61403061 61403207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 61404421 61404497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 61404606 61404769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 61405202 61405836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 61408054 61408506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGAGAGAGCCGGCGCTGGCGGCCAGCGCCATGGCTTACCACCCGTTCCACGCGCCACGGCCCGCCGACT
TCCCCATGTCCGCCTTTCTGGCGGCGGCGCAGCCCTCCTTCTTCCCGGCACTCGCGCTGCCGCCCGGCGC
GCTGGCCAAGCCGCTGCCCGACCCGGGCCTGGCGGGGGCGGCGGCCGCGGCGGCGGCGGCGGCAGCAGCG
GCCGAGGCGGGGCTGCACGTCTCGGCACTGGGCCCGCACCCGCCCGCCGCGCATCTGCGCTCCCTCAAGA
GCCTGGAGCCCGAGGACGAGGTGGAGGACGACCCCAAGGTGACGCTGGAGGCCAAGGAGCTGTGGGACCA
GTTCCACAAGCTAGGCACGGAGATGGTCATCACCAAGTCCGGGAGGCGGATGTTCCCCCCCTTCAAGGTG
CGAGTCAGCGGCCTGGACAAGAAGGCCAAGTATATCCTGCTGATGGACATTGTAGCCGCTGACGATTGCC
GCTATAAGTTCCACAACTCGCGCTGGATGGTGGCGGGCAAGGCCGACCCTGAGATGCCCAAACGCATGTA
CATCCACCCAGACAGCCCAGCCACGGGGGAGCAGTGGATGGCTAAGCCTGTGGCCTTCCACAAGCTGAAG
CTGACCAACAACATCTCTGACAAGCACGGCTTCACCATCCTAAACTCCATGCACAAGTACCAGCCGCGCT
TCCACATAGTGCGAGCCAACGACATCCTGAAGCTGCCTTACAGCACCTTCCGCACCTACGTGTTCCCGGA
GACCGACTTCATCGCCGTCACTGCCTACCAGAATGACAAGATCACACAGCTGAAGATCGACAACAACCCG
TTTGCCAAGGGCTTCCGGGACACCGGGAACGGCCGGCGGGAGAAAAGGAAGCAGCTGACGCTGCCGTCTC
TACGCTTGTACGAGGAGCACTGCAAACCCGAGCGCGATGGCGCGGAGTCAGACGCCTCGTCGTGCGACCC
TCCCCCCGCGCGGGAACCACCCACCTCCCCGGGCGCAGCGCCCAGTCCGCTGCGCCTGCACCGGGCCCGA
GCTGAGGAGAAGTCGTGCGCCGCGGACAGCGACCCGGAGCCTGAGCGGTTGAGCGAGGAGCGTGCGGGGG
CGCCGCTAGGCCGCAGCCCGGCTCCAGACAGCGCCAGCCCCACTCGCTTGACCGAACCCGAGCGCGCCCG
GGAGCGGCGTAGTCCCGAGAGGGGCAAGGAGCCGGCCGAGAGCGGCGGGGACGGCCCGTTCGGCCTGAGG
AGCCTGGAGAAGGAGCGCGCCGAAGCTCGGAGGAAGGACGAGGGGCGCAAGGAGGCGGCCGAGGGCAAGG
AGCAGGGCCTGGCGCCGCTGGTGGTGCAGACAGACAGTGCGTCCCCCCTGGGCGCCGGACACCTGCCCGG
CCTGGCCTTTTCCAGCCACTTGCACGGGCAGCAGTTCTTTGGGCCGCTGGGAGCCGGCCAGCCGCTCTTC
CTGCACCCTGGACAGTTCACCATGGGCCCTGGCGCCTTCTCCGCCATGGGCATGGGTCACCTACTGGCCT
CGGTGGCAGGCGGCGGCAACGGCGGAGGTGGCGGGCCTGGGACCGCCGCGGGGCTGGACGCAGGCGGGCT
GGGTCCCGCGGCCAGCGCAGCAAGCACCGCCGCGCCCTTCCCGTTCCACCTCTCCCAGCACATGCTGGCA
TCTCAGGGAATTCCAATGCCCACTTTCGGAGGCCTCTTCCCCTACCCCTACACCTACATGGCAGCAGCAG
CCGCAGCCGCCTCGGCTTTGCCCGCCACTAGTGCTGCAGCTGCCGCCGCCGCAGCCGCCGGCTCCCTCTC
CCGGAGCCCCTTCCTGGGCAGTGCCCGGCCCCGACTGCGTTTCAGCCCCTATCAGATCCCGGTCACCATC
CCGCCTAGCACTAGCCTCCTCACCACCGGGCTGGCCTCTGAGGGCTCCAAGGCCGCTGGTGGAAACAGCC
GGGAGCCTAGCCCCCTGCCCGAGCTGGCTCTCCGCAAAGTAGGGGCCCCATCCCGCGGTGCCCTGTCGCC
CAGTGGCTCGGCCAAGGAGGCGGCCAATGAACTGCAGAGCATCCAGAGACTGGTGAGTGGGCTGGAGAGC
CAGCGAGCCCTCTCCCCAGGCCGGGAGTCGCCCAAGTGA

Translation (712 aa):
MREPALAASAMAYHPFHAPRPADFPMSAFLAAAQPSFFPALALPPGALAKPLPDPGLAGAAAAAAAAAAA
AEAGLHVSALGPHPPAAHLRSLKSLEPEDEVEDDPKVTLEAKELWDQFHKLGTEMVITKSGRRMFPPFKV
RVSGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLK
LTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPYSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNP
FAKGFRDTGNGRREKRKQLTLPSLRLYEEHCKPERDGAESDASSCDPPPAREPPTSPGAAPSPLRLHRAR
AEEKSCAADSDPEPERLSEERAGAPLGRSPAPDSASPTRLTEPERARERRSPERGKEPAESGGDGPFGLR
SLEKERAEARRKDEGRKEAAEGKEQGLAPLVVQTDSASPLGAGHLPGLAFSSHLHGQQFFGPLGAGQPLF
LHPGQFTMGPGAFSAMGMGHLLASVAGGGNGGGGGPGTAAGLDAGGLGPAASAASTAAPFPFHLSQHMLA
SQGIPMPTFGGLFPYPYTYMAAAAAAASALPATSAAAAAAAAAGSLSRSPFLGSARPRLRFSPYQIPVTI
PPSTSLLTTGLASEGSKAAGGNSREPSPLPELALRKVGAPSRGALSPSGSAKEAANELQSIQRLVSGLES
QRALSPGRESPK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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