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Report for CCDS1153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1153.1 Public Homo sapiens 1 ISG20L2 24 110 108 CCDS HistoryNCBI Gene:81875Re-query CCDS DB by CCDS ID:1153.1Re-query CCDS DB by GeneID:81875See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1153.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000313146.10 ENSP00000323424.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000313146.10Link to Ensembl Protein Viewer:ENSP00000323424.6Re-query CCDS DB by Nucleotide ID:ENST00000313146Re-query CCDS DB by Protein ID:ENSP00000323424
Original member Current member EBI ENST00000368219.2 ENSP00000357202.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368219.2Link to Ensembl Protein Viewer:ENSP00000357202.2Re-query CCDS DB by Nucleotide ID:ENST00000368219Re-query CCDS DB by Protein ID:ENSP00000357202
Original member Current member NCBI NM_001303095.1 NP_001290024.1 Accepted alive Link to Nucleotide Sequence:NM_001303095.1Link to Protein Sequence:NP_001290024.1Re-query CCDS DB by Nucleotide ID:NM_001303095Re-query CCDS DB by Protein ID:NP_001290024Link to BLAST:NP_001290024.1
Original member Current member NCBI NM_001370150.2 NP_001357079.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370150.2Link to Protein Sequence:NP_001357079.1Re-query CCDS DB by Nucleotide ID:NM_001370150Re-query CCDS DB by Protein ID:NP_001357079Link to BLAST:NP_001357079.1
Original member Current member NCBI NM_001370151.1 NP_001357080.1 Accepted alive Link to Nucleotide Sequence:NM_001370151.1Link to Protein Sequence:NP_001357080.1Re-query CCDS DB by Nucleotide ID:NM_001370151Re-query CCDS DB by Protein ID:NP_001357080Link to BLAST:NP_001357080.1
Original member Current member NCBI NM_001370152.1 NP_001357081.1 Accepted alive Link to Nucleotide Sequence:NM_001370152.1Link to Protein Sequence:NP_001357081.1Re-query CCDS DB by Nucleotide ID:NM_001370152Re-query CCDS DB by Protein ID:NP_001357081Link to BLAST:NP_001357081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290024.1 353 Q9H9L3 353 100% 0 0
NP_001357079.1 353 Q9H9L3 353 100% 0 0
NP_001357080.1 353 Q9H9L3 353 100% 0 0
NP_001357081.1 353 Q9H9L3 353 100% 0 0

Chromosomal Locations for CCDS 1153.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156723349 156723462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156724148 156724348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156726906 156727652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCA
AGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACC
CCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACT
TGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACA
AGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGA
TTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAAGATCAATAGCCACCCAACCCGCTCTCAGAAGAAGAGC
TCCCAGAAGAAATCCTCTAAAAAGAACCATCCTCAGAAGAATGCCCCACAGAACTCCACCCAAGCTCATT
CAGAGAATAAATGCTCCGGAGCATCCCAGAAGTTGCCACGGAAGATGGTGGCAATTGACTGTGAGATGGT
GGGCACAGGACCAAAGGGGCATGTTAGTTCCTTGGCTCGATGTAGCATTGTCAACTACAACGGAGATGTG
CTTTATGACGAGTACATTCTTCCCCCCTGCCACATTGTGGACTACCGAACCAGGTGGAGTGGTATCCGGA
AGCAGCACATGGTGAATGCCACACCCTTCAAGATTGCTCGAGGCCAGATCTTGAAGATACTCACAGGGAA
GATAGTGGTGGGGCATGCCATCCACAACGACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACC
CGTGACACCTCCCATATCCCCCCCCTCAACCGGAAGGCTGACTGCCCGGAGAATGCCACCATGTCTCTGA
AGCATCTCACCAAGAAGCTGCTAAACCGGGATATCCAGGTTGGGAAGAGCGGACATTCCTCTGTGGAAGA
TGCCCAGGCCACCATGGAGCTATATAAGTTGGTTGAAGTCGAGTGGGAAGAGCACCTAGCCCGGAATCCC
CCTACAGACTAG

Translation (353 aa):
MSTLLLNLDFGEPPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGT
WKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSALPKINSHPTRSQKKS
SQKKSSKKNHPQKNAPQNSTQAHSENKCSGASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDV
LYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLT
RDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARNP
PTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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