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Report for CCDS11526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11526.1 Public Homo sapiens 17 SNX11 24 110 108 CCDS HistoryNCBI Gene:29916Re-query CCDS DB by CCDS ID:11526.1Re-query CCDS DB by GeneID:29916See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11526.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359238.7 ENSP00000352175.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359238.7Link to Ensembl Protein Viewer:ENSP00000352175.2Re-query CCDS DB by Nucleotide ID:ENST00000359238Re-query CCDS DB by Protein ID:ENSP00000352175
Original member Current member EBI ENST00000393405.6 ENSP00000377059.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393405.6Link to Ensembl Protein Viewer:ENSP00000377059.2Re-query CCDS DB by Nucleotide ID:ENST00000393405Re-query CCDS DB by Protein ID:ENSP00000377059
Original member Current member NCBI NM_013323.3 NP_037455.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013323.3Link to Protein Sequence:NP_037455.2Re-query CCDS DB by Nucleotide ID:NM_013323Re-query CCDS DB by Protein ID:NP_037455Link to BLAST:NP_037455.2
Original member Current member NCBI NM_152244.2 NP_689450.1 Accepted alive Link to Nucleotide Sequence:NM_152244.2Link to Protein Sequence:NP_689450.1Re-query CCDS DB by Nucleotide ID:NM_152244Re-query CCDS DB by Protein ID:NP_689450Link to BLAST:NP_689450.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037455.2 270 Q9Y5W9-1 270 100% 0 0
NP_689450.1 270 Q9Y5W9-1 270 100% 0 0

Chromosomal Locations for CCDS 11526.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48112044 48112085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48112574 48112660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48113301 48113401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48118704 48118799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48118974 48119186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48121235 48121508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGGCTTTTGGTGTAGGATGTCGGAGAACCAAGAACAGGAGGAGGTGATTACAGTGCGTGTTCAGGACC
CCCGAGTGCAGAATGAGGGCTCCTGGAACTCTTATGTGGATTATAAGATATTCCTCCATACCAACAGCAA
AGCCTTTACTGCCAAGACTTCCTGTGTGCGGCGCCGCTACCGTGAGTTCGTGTGGCTGAGAAAGCAGCTA
CAGAGAAATGCTGGTTTGGTGCCTGTTCCTGAACTTCCTGGGAAGTCAACCTTCTTCGGCACCTCAGATG
AGTTCATTGAGAAGCGACGACAAGGTCTGCAGCACTTCCTTGAAAAGGTCCTGCAGAGTGTGGTTCTCCT
GTCAGACAGCCAGTTGCACCTATTCCTGCAAAGCCAGCTCTCGGTGCCTGAGATAGAAGCCTGTGTCCAG
GGCCGAAGTACCATGACTGTGTCTGATGCCATTCTTCGATATGCTATGTCAAACTGTGGCTGGGCCCAGG
AAGAGAGGCAGAGCTCTTCTCACCTGGCTAAAGGAGACCAGCCTAAGAGTTGCTGCTTTCTTCCAAGATC
GGGTAGGAGGAGCTCTCCCTCACCGCCTCCCAGTGAAGAAAAGGACCATTTAGAAGTGTGGGCTCCAGTT
GTTGACTCTGAGGTTCCTTCCTTGGAAAGTCCCACTCTCCCACCCCTCTCCTCACCATTATGCTGTGATT
TTGGAAGACCCAAAGAGGGAACCTCCACTCTTCAGTCTGTGAGGAGGGCTGTGGGAGGAGATCATGCTGT
GCCTTTGGACCCTGGTCAGTTAGAAACAGTTTTGGAAAAGTGA

Translation (270 aa):
MGFWCRMSENQEQEEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQL
QRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQ
GRSTMTVSDAILRYAMSNCGWAQEERQSSSHLAKGDQPKSCCFLPRSGRRSSPSPPPSEEKDHLEVWAPV
VDSEVPSLESPTLPPLSSPLCCDFGRPKEGTSTLQSVRRAVGGDHAVPLDPGQLETVLEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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