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Report for CCDS11372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11372.1 Public Homo sapiens 17 KRT24 24 110 108 CCDS HistoryNCBI Gene:192666Re-query CCDS DB by CCDS ID:11372.1Re-query CCDS DB by GeneID:192666See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 11372.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264651.3 ENSP00000264651.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264651.3Link to Ensembl Protein Viewer:ENSP00000264651.2Re-query CCDS DB by Nucleotide ID:ENST00000264651Re-query CCDS DB by Protein ID:ENSP00000264651
Original member Current member NCBI NM_019016.3 NP_061889.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019016.3Link to Protein Sequence:NP_061889.2Re-query CCDS DB by Nucleotide ID:NM_019016Re-query CCDS DB by Protein ID:NP_061889Link to BLAST:NP_061889.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061889.2 525 Q2M2I5 525 100% 0 0

Chromosomal Locations for CCDS 11372.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40698237 40698340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40698538 40698650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40699444 40699661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40699998 40700123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40700222 40700383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40701140 40701296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40701851 40701933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40703079 40703693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGTCTTGCTCGTCTCGCGCCTCCTCCTCCAGGGCTGGAGGCAGCAGCTCAGCCAGGGTGTCTGCTGGTG
GAAGCAGCTTCAGCAGTGGAAGCAGATGTGGTCTGGGGGGCAGCTCGGCCCAGGGCTTCCGAGGAGGAGC
CAGCAGCTGCAGCCTGAGTGGGGGGTCTAGCGGTGCTTTTGGGGGCAGCTTTGGAGGGGGCTTTGGTAGC
TGCTCAGTAGGGGGTGGTTTTGGGGGAGCTTCAGGCTCTGGGACAGGATTTGGTGGGGGTTCTAGCTTTG
GCGGGGTCTCTGGATTTGGCAGGGGTTCTGGATTCTGTGGGAGTTCTAGATTCAGCAGTGGTGCTACTGG
AGGCTTCTACAGCTATGGTGGTGGTATGGGAGGTGGTGTTGGCGATGGGGGGCTTTTCTCTGGAGGGGAA
AAGCAAACCATGCAGAACCTCAATGACCGCTTGGCCAATTACCTAGACAAGGTCAGAGCCCTGGAGGAGG
CTAACACTGATCTGGAGAACAAAATCAAGGAGTGGTATGACAAATATGGGCCTGGGTCTGGAGACGGTGG
ATCGGGAAGAGATTATAGCAAATACTATTCAATAATTGAAGATCTCAGAAACCAGATCATTGCTGCCACT
GTTGAAAATGCTGGGATCATTTTGCACATTGACAATGCCAGATTGGCTGCTGATGACTTCAGACTGAAGT
ATGAGAACGAGCTGTGTCTCCGGCAGAGCGTGGAGGCTGACATCAATGGCCTGCGGAAAGTCCTGGATGA
CCTGACTATGACCCGCTCTGACCTGGAGATGCAGATTGAGAGTTTCACCGAGGAGCTAGCCTACCTGAGG
AAGAACCACGAGGAGGAAATGAAGAATATGCAAGGAAGCTCTGGAGGGGAGGTGACCGTAGAAATGAATG
CTGCGCCAGGGACCGACCTGACCAAATTACTGAATGACATGAGGGCGCAGTACGAGGAGCTGGCTGAGCA
AAACCGCCGAGAGGCTGAGGAGCGGTTCAACAAGCAGAGCGCATCACTACAAGCACAAATCTCCACTGAT
GCTGGGGCAGCCACTTCTGCCAAGAATGAGATAACAGAACTAAAACGTACCCTGCAAGCCCTGGAAATTG
AGCTTCAGTCCCAACTGGCCATGAAAAGCTCCCTGGAGGGAACCCTGGCTGACACAGAAGCTGGCTACGT
GGCTCAGCTGTCAGAAATTCAAACGCAGATCAGTGCCCTGGAGGAGGAGATCTGCCAGATCTGGGGTGAG
ACTAAATGCCAGAACGCAGAGTACAAGCAATTGCTGGACATCAAGACACGCCTGGAGGTGGAGATCGAGA
CCTACCGCCGCCTGCTCGATGGAGAGGGAGGTGGTTCTAGTTTTGCAGAATTTGGTGGTAGAAACTCAGG
ATCTGTAAACATGGGATCCAGGGATCTGGTATCTGGTGACTCAAGATCTGGAAGCTGTTCTGGTCAAGGA
CGAGATTCAAGCAAGACTAGAGTGACTAAGACTATCGTAGAGGAGTTGGTGGATGGCAAGGTTGTCTCGT
CTCAAGTCAGCAGTATTTCTGAGGTGAAAGTTAAATAA

Translation (525 aa):
MSCSSRASSSRAGGSSSARVSAGGSSFSSGSRCGLGGSSAQGFRGGASSCSLSGGSSGAFGGSFGGGFGS
CSVGGGFGGASGSGTGFGGGSSFGGVSGFGRGSGFCGSSRFSSGATGGFYSYGGGMGGGVGDGGLFSGGE
KQTMQNLNDRLANYLDKVRALEEANTDLENKIKEWYDKYGPGSGDGGSGRDYSKYYSIIEDLRNQIIAAT
VENAGIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLR
KNHEEEMKNMQGSSGGEVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEERFNKQSASLQAQISTD
AGAATSAKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEAGYVAQLSEIQTQISALEEEICQIWGE
TKCQNAEYKQLLDIKTRLEVEIETYRRLLDGEGGGSSFAEFGGRNSGSVNMGSRDLVSGDSRSGSCSGQG
RDSSKTRVTKTIVEELVDGKVVSSQVSSISEVKVK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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