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Report for CCDS11283.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11283.2 Public Homo sapiens 17 TMEM132E 24 110 108 CCDS HistoryNCBI Gene:124842Re-query CCDS DB by CCDS ID:11283.2Re-query CCDS DB by GeneID:124842See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11283.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data. The 5' exon structure of this update is inferred from orthologous transcript alignments.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11283.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000631683.2 ENSP00000487800.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000631683.2Link to Ensembl Protein Viewer:ENSP00000487800.2Re-query CCDS DB by Nucleotide ID:ENST00000631683Re-query CCDS DB by Protein ID:ENSP00000487800
Original member Current member NCBI NM_001304438.2 NP_001291367.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304438.2Link to Protein Sequence:NP_001291367.1Re-query CCDS DB by Nucleotide ID:NM_001304438Re-query CCDS DB by Protein ID:NP_001291367Link to BLAST:NP_001291367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291367.1 1074 Q6IEE7 1074 100% 0 0

Chromosomal Locations for CCDS 11283.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34581077 34581143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34626127 34627057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34628563 34628709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34629012 34629204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34630008 34630151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34632704 34632909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34634799 34635087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34636007 34636198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34637177 34638232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGGCCCCGGGGATGTCGGGCCGCGGCGGCGCCGCCCTGCTCTGCCTCTCAGCGCTACTCGCCCACGCCT
CTGGCCGCTCCCACCCGGCCAGCCCCAGCCCGCCGGGGCCGCAGGCCAGCCCGGTGCTGCCAGTCAGCTA
CCGCCTGTCGCACACGCGGCTGGCCTTCTTCCTGCGGGAGGCGCGGCCCCCGTCACCCGCGGTCGCCAAC
AGCTCTCTGCAGCGCTCCGAGCCCTTCGTGGTGTTCCAGACCAAGGAGCTGCCGGTCCTCAACGTCTCTC
TGGGGCCCTTCAGCACCAGCCAGGTGGTGGCGCGGGAGCTCCTGCAGCCGTCCAGCACCCTGGACATCCC
CGAGCGCCTGACGGTGAACTGGAAGGTGCGGGCCTTCATCGTCCGCTCGCACGTGCCCGCCTCGCAGCCC
GTGGTCCAGGTGCTGTTCTACGTAGCCGGCCGGGACTGGGACGACTTCGGCGTCACCGAGCGGCTGCCCT
GTGTCCGCCTGCATGCCTTCCGGGATGCCCGGGAAGTCAAGAGCTCCTGCCGCCTCAGCGGGGGCCTGGC
CACTTGTCTGGTGCGGGCAGAGCTGCCCCTGGCCTGGTTCGGGCCCCCAGCCCCCGCTGCGCCACCCACG
GCCCGCCGCAAGTCCCCGGACGGGCTGGAGCCCGAGGCGACGGGGGAGAGCCAGCAGGCCGAGCTCTACT
ACACGCTCCACGCCCCTGATGCGTCGGGGGGCTGCGGGGGCTCCCGCCGGGGGGCCGGGCCCGGGGTGGG
GGCCCGAGCGGAAAGCCCTACCCAGCACCCCCTGCTGCGCATCGGGAGCATCAGCCTGTTCCGCCCGCCC
CCCAGGAGGACCCTGCAGGAGCACAGGCTGGACAGCAACCTGATGATCCGCCTGCCAGACCGGCCCCTCA
AGCCCGGGGAAGTGCTCAGCATCCTCCTCTATCTGGCCCCCAACTCCTCCTCGCCCTCCAGCCCCAGCGT
GGAGCACTTCACACTCAGGGTGAAGGCCAAGAAGGGTGTGACCCTTTTAGGTACCAAGTCACGGAGTGGC
CAGTGGCATGTGACCTCGGAGCTGCTGACTGGGGCAAAGCACTCAACAGCCACCGTGGATGTGGCCTGGG
CTCAGAGCACACCCCTGCCCCCCAGGGAGGGCCAGGGCCCCTTGGAGATCTTGCAGCTGGACTTTGAAAT
GGAGAACTTCACCAGCCAGTCAGTCAAGCGGAGGATCATGTGGCACATTGACTACCGTGGCCACGGCGCC
CTGCCTGACCTGGAGCGGGCAGTCACTGAGCTGACGGTCATTCAGCGGGATGTGCAAGCCATCCTGCCCC
TGGCCATGGACACAGAGATCATCAACACGGCCATTCTGACTGGCCGGACAGTGGCCATCCCTGTCAAGGT
CATTGCCATCGAGGTGAATGGCCTCGTCCTGGACATCTCCGCCCTAGTGGAATGCGAGTCTGACAATGAA
GACATCATCAAGGTATCCAGCAGCTGTGACTACGTGTTTGTGAGTGGAAAAGAGTCTCGAGGGTCCATGA
ACGCCAGGGTCACCTTCCGCTACGACGTCCTCAATGCTCCCCTGGAAATGACAGTCTGGGTCCCCAAGCT
GCCCTTGCACATTGAGCTCTCAGATGCCCGCCTCAGCCAAGTGAAGGGCTGGAGGGTACCTATCCTCCCC
GACCGGAGGTCAGTCCGGGAAAGCGAGGATGAGGATGAGGAGGAGGAGGAGCGGCGGCAGAGTGCAAGCC
GTGGCTGCACCCTGCAGTACCAGCATGCCACCCTGCAGGTCTTCACCCAGTTCCACACGACATCATCCGA
GGGCACTGACCAGGTGGTCACCATGTTAGGCCCGGACTGGCTGGTGGAGGTCACCGACCTAGTCAGTGAC
TTCATGCGGGTGGGCGATCCCCGAGTGGCACACATGGTGGACAGCAGCACGCTGGCAGGACTGGAGCCAG
GCACCACCCCCTTTAAGGTGGTGTCTCCGCTGACGGAGGCTGTGCTCGGGGAGACGCTGCTGACGGTGAC
TGAGGAGAAGGTCAGCATCACACAGCTTCAGGCCCAGGTGGTGGCCAGCCTGGCCCTCTCCCTGCGGCCC
AGCCCTGGGAGCAGCCACACCATCCTAGCCACCACAGCTGCCCAACAGACCTTGAGCTTCCTCAAGCAGG
AAGCCCTACTGAGCCTCTGGCTCTCCTACAGTGATGGCACCACAGCCCCACTCTCCCTCTACAGCCCACG
AGACTATGGACTGCTAGTGAGCAGCCTGGATGAGCATGTGGCCACTGTGACCCAGGACCGGGCCTTCCCT
CTGGTAGTGGCTGAGGCCGAGGGGTCAGGGGAGCTGCTTCGCGCAGAGCTAACCATCGCTGAGAGCTGCC
AGAAAACCAAACGCAAGAGTGTGCTCGCCACGACCCCTGTGGGCCTGCGGGTGCACTTTGGGAGGGACGA
GGAGGACCCCACTTATGACTACCCGGGCCCCAGCCAACCAGGGCCCGGCGGGGGCGAGGACGAGGCCCGG
GGAGCTGGCCCGCCGGGCTCTGCGCTACCCGCACCGGAGGCTCCAGGCCCGGGCACCGCCAGCCCCGTCG
TGCCACCCACAGAAGACTTCCTGCCGCTGCCCACCGGCTTCCTGCAGGTGCCACGGGGTCTGACAGACCT
GGAGATCGGCATGTACGCGCTGCTGGGCGTCTTCTGCCTCGCCATCCTCGTCTTCCTCATCAACTGCATC
GTTTTTGTGCTGCGCTACCGGCACAAGCGCATCCCGCCCGAGGGCCAGACCAGCATGGACCACTCTCACC
ACTGGGTGTTCCTGGGCAACGGGCAGCCGCTGCGGGTGCAAGGAGAGCTGTCGCCGCCAGCAGGCAACCC
GCTGGAAACCGTGCCCGCCTTCTGCCACGGCGACCACCACAGCAGCGGCAGCTCGCAGACCAGCGTCCAG
AGCCAGGTGCACGGCAGGGGCGACGGCTCCTCGGGCGGCTCAGCCCGAGACCAAGCCGAGGACCCCGCCA
GCTCGCCCACCTCCAAGCGCAAGCGGGTCAAGTTCACCACCTTCACCACGCTGCCGTCAGAGGAGCTGGC
CTATGACTCGGTGCCCGCGGGCGAAGAGGACGAGGAGGAGGAAGAGGACCTGGGTTGGGGCTGCCCGGAT
GTGGCGGGCCCCACGCGGCCCACTGCACCCCCGGACCTGCACAATTACATGCGCAGAATCAAAGAGATTG
CATAG

Translation (1074 aa):
MAPGMSGRGGAALLCLSALLAHASGRSHPASPSPPGPQASPVLPVSYRLSHTRLAFFLREARPPSPAVAN
SSLQRSEPFVVFQTKELPVLNVSLGPFSTSQVVARELLQPSSTLDIPERLTVNWKVRAFIVRSHVPASQP
VVQVLFYVAGRDWDDFGVTERLPCVRLHAFRDAREVKSSCRLSGGLATCLVRAELPLAWFGPPAPAAPPT
ARRKSPDGLEPEATGESQQAELYYTLHAPDASGGCGGSRRGAGPGVGARAESPTQHPLLRIGSISLFRPP
PRRTLQEHRLDSNLMIRLPDRPLKPGEVLSILLYLAPNSSSPSSPSVEHFTLRVKAKKGVTLLGTKSRSG
QWHVTSELLTGAKHSTATVDVAWAQSTPLPPREGQGPLEILQLDFEMENFTSQSVKRRIMWHIDYRGHGA
LPDLERAVTELTVIQRDVQAILPLAMDTEIINTAILTGRTVAIPVKVIAIEVNGLVLDISALVECESDNE
DIIKVSSSCDYVFVSGKESRGSMNARVTFRYDVLNAPLEMTVWVPKLPLHIELSDARLSQVKGWRVPILP
DRRSVRESEDEDEEEEERRQSASRGCTLQYQHATLQVFTQFHTTSSEGTDQVVTMLGPDWLVEVTDLVSD
FMRVGDPRVAHMVDSSTLAGLEPGTTPFKVVSPLTEAVLGETLLTVTEEKVSITQLQAQVVASLALSLRP
SPGSSHTILATTAAQQTLSFLKQEALLSLWLSYSDGTTAPLSLYSPRDYGLLVSSLDEHVATVTQDRAFP
LVVAEAEGSGELLRAELTIAESCQKTKRKSVLATTPVGLRVHFGRDEEDPTYDYPGPSQPGPGGGEDEAR
GAGPPGSALPAPEAPGPGTASPVVPPTEDFLPLPTGFLQVPRGLTDLEIGMYALLGVFCLAILVFLINCI
VFVLRYRHKRIPPEGQTSMDHSHHWVFLGNGQPLRVQGELSPPAGNPLETVPAFCHGDHHSSGSSQTSVQ
SQVHGRGDGSSGGSARDQAEDPASSPTSKRKRVKFTTFTTLPSEELAYDSVPAGEEDEEEEEDLGWGCPD
VAGPTRPTAPPDLHNYMRRIKEIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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