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Report for CCDS11171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11171.1 Public Homo sapiens 17 TRIM16 24 110 108 CCDS HistoryNCBI Gene:10626Re-query CCDS DB by CCDS ID:11171.1Re-query CCDS DB by GeneID:10626See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11171.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336708.11 ENSP00000338989.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336708.11Link to Ensembl Protein Viewer:ENSP00000338989.7Re-query CCDS DB by Nucleotide ID:ENST00000336708Re-query CCDS DB by Protein ID:ENSP00000338989
Original member Current member EBI ENST00000578237.5 ENSP00000463188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000578237.5Link to Ensembl Protein Viewer:ENSP00000463188.1Re-query CCDS DB by Nucleotide ID:ENST00000578237Re-query CCDS DB by Protein ID:ENSP00000463188
Original member Current member EBI ENST00000649191.2 ENSP00000497185.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649191.2Link to Ensembl Protein Viewer:ENSP00000497185.2Re-query CCDS DB by Nucleotide ID:ENST00000649191Re-query CCDS DB by Protein ID:ENSP00000497185
Original member Current member NCBI NM_001348119.1 NP_001335048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001348119.1Link to Protein Sequence:NP_001335048.1Re-query CCDS DB by Nucleotide ID:NM_001348119Re-query CCDS DB by Protein ID:NP_001335048Link to BLAST:NP_001335048.1
Original member Current member NCBI NM_001348120.1 NP_001335049.1 Accepted alive Link to Nucleotide Sequence:NM_001348120.1Link to Protein Sequence:NP_001335049.1Re-query CCDS DB by Nucleotide ID:NM_001348120Re-query CCDS DB by Protein ID:NP_001335049Link to BLAST:NP_001335049.1
Original member Current member NCBI NM_006470.4 NP_006461.3 Accepted alive Link to Nucleotide Sequence:NM_006470.4Link to Protein Sequence:NP_006461.3Re-query CCDS DB by Nucleotide ID:NM_006470Re-query CCDS DB by Protein ID:NP_006461Link to BLAST:NP_006461.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335048.1 564 O95361-1 564 100% 0 0
NP_001335049.1 564 O95361-1 564 100% 0 0
NP_006461.3 564 O95361-1 564 100% 0 0

Chromosomal Locations for CCDS 11171.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15628615 15629198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15631619 15631714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15632509 15632674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15636036 15636269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15642721 15642816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15651091 15651609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGCTGAGTTGGATCTAATGGCTCCAGGGCCACTGCCCAGGGCCACTGCTCAGCCCCCAGCCCCTCTCA
GCCCAGACTCTGGGTCACCCAGCCCAGATTCTGGGTCAGCCAGCCCAGTGGAAGAAGAGGACGTGGGCTC
CTCGGAGAAGCTTGGCAGGGAGACGGAGGAACAGGACAGCGACTCTGCAGAGCAGGGGGATCCTGCTGGT
GAGGGGAAAGAGGTCCTGTGTGACTTCTGCCTTGATGACACCAGAAGAGTGAAGGCAGTGAAGTCCTGTC
TAACCTGCATGGTGAATTACTGTGAAGAGCACTTGCAGCCGCATCAGGTGAACATCAAACTGCAAAGCCA
CCTGCTGACCGAGCCAGTGAAGGACCACAACTGGCGATACTGCCCTGCCCACCACAGCCCACTGTCTGCC
TTCTGCTGCCCTGATCAGCAGTGCATCTGCCAGGACTGTTGCCAGGAGCACAGTGGCCACACCATAGTCT
CCCTGGATGCAGCCCGCAGGGACAAGGAGGCTGAACTCCAGTGCACCCAGTTAGACTTGGAGCGGAAACT
CAAGTTGAATGAAAATGCCATCTCCAGGCTCCAGGCTAACCAAAAGTCTGTTCTGGTGTCGGTGTCAGAG
GTCAAAGCGGTGGCTGAAATGCAGTTTGGGGAACTCCTTGCTGCTGTGAGGAAGGCCCAGGCCAATGTGA
TGCTCTTCTTAGAGGAGAAGGAGCAAGCTGCGCTGAGCCAGGCCAACGGTATCAAGGCCCACCTGGAGTA
CAGGAGTGCCGAGATGGAGAAGAGCAAGCAGGAGCTGGAGAGGATGGCGGCCATCAGCAACACTGTCCAG
TTCTTGGAGGAGTACTGCAAGTTTAAGAACACTGAAGACATCACCTTCCCTAGTGTTTACGTAGGGCTGA
AGGATAAACTCTCGGGCATCCGCAAAGTTATCACGGAATCCACTGTACACTTAATCCAGTTGCTGGAGAA
CTATAAGAAAAAGCTCCAGGAGTTTTCCAAGGAAGAGGAGTATGACATCAGAACTCAAGTGTCTGCCGTT
GTTCAGCGCAAATATTGGACTTCCAAACCTGAGCCCAGCACCAGGGAACAGTTCCTCCAATATGCGTATG
ACATCACGTTTGACCCGGACACAGCACACAAGTATCTCCGGCTGCAGGAGGAGAACCGCAAGGTCACCAA
CACCACGCCCTGGGAGCATCCCTACCCGGACCTCCCCAGCAGGTTCCTGCACTGGCGGCAGGTGCTGTCC
CAGCAGAGTCTGTACCTGCACAGGTACTATTTTGAGGTGGAGATCTTCGGGGCAGGCACCTATGTTGGCC
TGACCTGCAAAGGCATCGACCGGAAAGGGGAGGAGCGCAACAGTTGCATTTCCGGAAACAACTTCTCCTG
GAGCCTCCAATGGAACGGGAAGGAGTTCACGGCCTGGTACAGTGACATGGAGACCCCACTCAAAGCTGGC
CCTTTCCGGAGGCTCGGGGTCTATATCGACTTCCCGGGAGGGATCCTTTCCTTCTATGGCGTAGAGTATG
ATACCATGACTCTGGTTCACAAGTTTGCCTGCAAATTTTCAGAACCAGTCTATGCTGCCTTCTGGCTTTC
CAAGAAGGAAAACGCCATCCGGATTGTAGATCTGGGAGAGGAACCCGAGAAGCCAGCACCGTCCTTGGTG
GGGACTGCTCCCTAG

Translation (564 aa):
MAELDLMAPGPLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAG
EGKEVLCDFCLDDTRRVKAVKSCLTCMVNYCEEHLQPHQVNIKLQSHLLTEPVKDHNWRYCPAHHSPLSA
FCCPDQQCICQDCCQEHSGHTIVSLDAARRDKEAELQCTQLDLERKLKLNENAISRLQANQKSVLVSVSE
VKAVAEMQFGELLAAVRKAQANVMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQELERMAAISNTVQ
FLEEYCKFKNTEDITFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKLQEFSKEEEYDIRTQVSAV
VQRKYWTSKPEPSTREQFLQYAYDITFDPDTAHKYLRLQEENRKVTNTTPWEHPYPDLPSRFLHWRQVLS
QQSLYLHRYYFEVEIFGAGTYVGLTCKGIDRKGEERNSCISGNNFSWSLQWNGKEFTAWYSDMETPLKAG
PFRRLGVYIDFPGGILSFYGVEYDTMTLVHKFACKFSEPVYAAFWLSKKENAIRIVDLGEEPEKPAPSLV
GTAP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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