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Report for CCDS11103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11103.1 Public Homo sapiens 17 NLGN2 24 110 108 CCDS HistoryNCBI Gene:57555Re-query CCDS DB by CCDS ID:11103.1Re-query CCDS DB by GeneID:57555See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302926.7 ENSP00000305288.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302926.7Link to Ensembl Protein Viewer:ENSP00000305288.2Re-query CCDS DB by Nucleotide ID:ENST00000302926Re-query CCDS DB by Protein ID:ENSP00000305288
Original member Current member EBI ENST00000575301.5 ENSP00000461168.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575301.5Link to Ensembl Protein Viewer:ENSP00000461168.1Re-query CCDS DB by Nucleotide ID:ENST00000575301Re-query CCDS DB by Protein ID:ENSP00000461168
Original member Current member NCBI NM_020795.4 NP_065846.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020795.4Link to Protein Sequence:NP_065846.1Re-query CCDS DB by Nucleotide ID:NM_020795Re-query CCDS DB by Protein ID:NP_065846Link to BLAST:NP_065846.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065846.1 835 Q8NFZ4 835 100% 0 0

Chromosomal Locations for CCDS 11103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7408256 7408712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7412157 7412207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7414344 7414493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7414663 7414848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7414956 7415148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7415511 7416107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7416926 7417799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGTGGCTCCTGGCGCTGTGTCTGGTGGGGCTGGCGGGGGCTCAACGCGGGGGAGGGGGTCCCGGCGGCG
GCGCCCCGGGCGGCCCCGGCCTGGGCCTCGGCAGCCTCGGCGAGGAGCGCTTCCCGGTGGTGAACACGGC
CTACGGGCGAGTGCGCGGTGTGCGGCGCGAGCTCAACAACGAGATCCTGGGCCCCGTCGTGCAGTTCTTG
GGCGTGCCCTACGCCACGCCGCCCCTGGGCGCCCGCCGCTTCCAGCCGCCTGAGGCGCCCGCCTCGTGGC
CCGGCGTGCGCAACGCCACCACCCTGCCGCCCGCCTGCCCGCAGAACCTGCACGGGGCGCTGCCCGCCAT
CATGCTGCCTGTGTGGTTCACCGACAACTTGGAGGCGGCCGCCACCTACGTGCAGAACCAGAGCGAGGAC
TGCCTGTACCTCAACCTCTACGTGCCCACCGAGGACGGTCCGCTCACAAAAAAACGTGACGAGGCGACGC
TCAATCCGCCAGACACAGATATCCGTGACCCTGGGAAGAAGCCTGTGATGCTGTTTCTCCATGGCGGCTC
CTACATGGAGGGGACCGGAAACATGTTCGATGGCTCAGTCCTGGCTGCCTATGGCAACGTCATTGTAGCC
ACGCTCAACTACCGTCTTGGGGTGCTCGGTTTTCTCAGCACCGGGGACCAGGCTGCAAAAGGCAACTATG
GGCTCCTGGACCAGATCCAGGCCCTGCGCTGGCTCAGTGAAAACATCGCCCACTTTGGGGGCGACCCCGA
GCGTATCACCATCTTTGGTTCCGGGGCAGGGGCCTCCTGCGTCAACCTTCTGATCCTCTCCCACCATTCA
GAAGGGCTGTTCCAGAAGGCCATCGCCCAGAGTGGCACCGCCATTTCCAGCTGGTCTGTCAACTACCAGC
CGCTCAAGTACACGCGGCTGCTGGCAGCCAAGGTGGGCTGTGACCGAGAGGACAGCGCTGAAGCTGTGGA
GTGTCTGCGCCGGAAGCCCTCCCGGGAGCTGGTGGACCAGGACGTGCAGCCTGCCCGCTACCACATCGCC
TTTGGGCCCGTGGTGGATGGCGACGTGGTCCCCGATGACCCTGAGATCCTCATGCAGCAGGGAGAATTCC
TCAACTACGACATGCTCATCGGCGTCAACCAGGGAGAGGGCCTCAAGTTCGTGGAGGACTCTGCAGAGAG
CGAGGACGGTGTGTCTGCCAGCGCCTTTGACTTCACTGTCTCCAACTTTGTGGACAACCTGTATGGCTAC
CCGGAAGGCAAGGATGTGCTTCGGGAGACCATCAAGTTTATGTACACAGACTGGGCCGACCGGGACAATG
GCGAAATGCGCCGCAAAACCCTGCTGGCGCTCTTTACTGACCACCAATGGGTGGCACCAGCTGTGGCCAC
TGCCAAGCTGCACGCCGACTACCAGTCTCCCGTCTACTTTTACACCTTCTACCACCACTGCCAGGCGGAG
GGCCGGCCTGAGTGGGCAGATGCGGCGCACGGGGATGAACTGCCCTATGTCTTTGGCGTGCCCATGGTGG
GTGCCACCGACCTCTTCCCCTGTAACTTCTCCAAGAATGACGTCATGCTCAGTGCCGTGGTCATGACCTA
CTGGACCAACTTCGCCAAGACTGGGGACCCCAACCAGCCGGTGCCGCAGGATACCAAGTTCATCCACACC
AAGCCCAATCGCTTCGAGGAGGTGGTGTGGAGCAAATTCAACAGCAAGGAGAAGCAGTATCTGCACATAG
GCCTGAAGCCACGCGTGCGTGACAACTACCGCGCCAACAAGGTGGCCTTCTGGCTGGAGCTCGTGCCCCA
CCTGCACAACCTGCACACGGAGCTCTTCACCACCACCACGCGCCTGCCTCCCTACGCCACGCGCTGGCCG
CCTCGTCCCCCCGCTGGCGCCCCGGGCACACGCCGGCCCCCGCCGCCTGCCACCCTGCCTCCCGAGCCCG
AGCCCGAGCCCGGCCCAAGGGCCTATGACCGCTTCCCCGGGGACTCACGGGACTACTCCACGGAGCTGAG
CGTCACCGTGGCCGTGGGTGCCTCCCTCCTCTTCCTCAACATCCTGGCCTTTGCTGCCCTCTACTACAAG
CGGGACCGGCGGCAGGAGCTGCGGTGCAGGCGGCTTAGCCCACCTGGCGGCTCAGGCTCTGGCGTGCCTG
GTGGGGGCCCCCTGCTCCCCGCCGCGGGCCGTGAGCTGCCACCAGAGGAGGAGCTGGTGTCACTGCAGCT
GAAGCGGGGTGGTGGCGTCGGGGCGGACCCTGCCGAGGCTCTGCGCCCTGCCTGCCCGCCCGACTACACC
CTGGCCCTGCGCCGGGCACCGGACGATGTGCCTCTCTTGGCCCCCGGGGCCCTGACCCTGCTGCCCAGTG
GCCTGGGGCCACCGCCACCCCCACCGCCCCCCTCCCTTCATCCCTTCGGGCCCTTCCCCCCGCCCCCTCC
CACCGCCACCAGCCACAACAACACGCTACCCCACCCCCACTCCACCACTCGGGTATAG

Translation (835 aa):
MWLLALCLVGLAGAQRGGGGPGGGAPGGPGLGLGSLGEERFPVVNTAYGRVRGVRRELNNEILGPVVQFL
GVPYATPPLGARRFQPPEAPASWPGVRNATTLPPACPQNLHGALPAIMLPVWFTDNLEAAATYVQNQSED
CLYLNLYVPTEDGPLTKKRDEATLNPPDTDIRDPGKKPVMLFLHGGSYMEGTGNMFDGSVLAAYGNVIVA
TLNYRLGVLGFLSTGDQAAKGNYGLLDQIQALRWLSENIAHFGGDPERITIFGSGAGASCVNLLILSHHS
EGLFQKAIAQSGTAISSWSVNYQPLKYTRLLAAKVGCDREDSAEAVECLRRKPSRELVDQDVQPARYHIA
FGPVVDGDVVPDDPEILMQQGEFLNYDMLIGVNQGEGLKFVEDSAESEDGVSASAFDFTVSNFVDNLYGY
PEGKDVLRETIKFMYTDWADRDNGEMRRKTLLALFTDHQWVAPAVATAKLHADYQSPVYFYTFYHHCQAE
GRPEWADAAHGDELPYVFGVPMVGATDLFPCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHT
KPNRFEEVVWSKFNSKEKQYLHIGLKPRVRDNYRANKVAFWLELVPHLHNLHTELFTTTTRLPPYATRWP
PRPPAGAPGTRRPPPPATLPPEPEPEPGPRAYDRFPGDSRDYSTELSVTVAVGASLLFLNILAFAALYYK
RDRRQELRCRRLSPPGGSGSGVPGGGPLLPAAGRELPPEEELVSLQLKRGGGVGADPAEALRPACPPDYT
LALRRAPDDVPLLAPGALTLLPSGLGPPPPPPPPSLHPFGPFPPPPPTATSHNNTLPHPHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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