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Report for CCDS11073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11073.1 Public Homo sapiens 17 DERL2 24 110 108 CCDS HistoryNCBI Gene:51009Re-query CCDS DB by CCDS ID:11073.1Re-query CCDS DB by GeneID:51009See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11073.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000158771.9 ENSP00000158771.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000158771.9Link to Ensembl Protein Viewer:ENSP00000158771.4Re-query CCDS DB by Nucleotide ID:ENST00000158771Re-query CCDS DB by Protein ID:ENSP00000158771
Original member Current member NCBI NM_016041.5 NP_057125.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016041.5Link to Protein Sequence:NP_057125.2Re-query CCDS DB by Nucleotide ID:NM_016041Re-query CCDS DB by Protein ID:NP_057125Link to BLAST:NP_057125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057125.2 239 Q9GZP9 239 100% 0 0

Chromosomal Locations for CCDS 11073.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5474684 5474789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5480054 5480144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5480387 5480582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5481296 5481389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5482809 5482882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5485151 5485216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5486069 5486161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGCGTACCAGAGCTTGCGGCTGGAGTACCTGCAGATCCCACCGGTCAGCCGCGCCTACACCACTGCCT
GCGTCCTCACCACCGCCGCCGTGCAGTTGGAATTGATCACACCTTTTCAGTTGTACTTCAATCCTGAATT
AATCTTTAAACACTTTCAAATATGGAGATTAATCACCAACTTCTTATTTTTTGGGCCAGTTGGATTCAAT
TTTTTATTTAACATGATTTTTCTATATCGTTACTGTCGAATGCTAGAAGAAGGCTCTTTCCGAGGTCGGA
CAGCAGACTTTGTATTTATGTTCCTTTTTGGTGGATTCTTAATGACCCTTTTTGGTCTGTTTGTGAGCTT
AGTTTTCTTGGGCCAGGCCTTTACAATAATGCTCGTCTATGTGTGGAGCCGAAGGAACCCCTATGTCCGC
ATGAACTTCTTCGGCCTTCTCAACTTCCAGGCCCCCTTTCTGCCCTGGGTGCTCATGGGATTTTCCTTGT
TGTTGGGGAACTCAATCATTGTGGACCTTTTGGGTATTGCAGTTGGACACATATATTTTTTCTTGGAAGA
TGTATTTCCCAATCAACCTGGTGGAATAAGAATTCTGAAAACACCATCTATTTTGAAAGCTATTTTTGAT
ACACCAGATGAGGATCCAAATTACAATCCACTACCTGAGGAACGGCCAGGAGGCTTCGCCTGGGGTGAGG
GCCAGCGGCTTGGAGGTTAA

Translation (239 aa):
MAYQSLRLEYLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFN
FLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMTLFGLFVSLVFLGQAFTIMLVYVWSRRNPYVR
MNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIFD
TPDEDPNYNPLPEERPGGFAWGEGQRLGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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