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Report for CCDS11060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11060.1 Public Homo sapiens 17 RNF167 24 110 108 CCDS HistoryNCBI Gene:26001Re-query CCDS DB by CCDS ID:11060.1Re-query CCDS DB by GeneID:26001See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262482.11 ENSP00000262482.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262482.11Link to Ensembl Protein Viewer:ENSP00000262482.6Re-query CCDS DB by Nucleotide ID:ENST00000262482Re-query CCDS DB by Protein ID:ENSP00000262482
Original member Current member EBI ENST00000572430.5 ENSP00000458794.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572430.5Link to Ensembl Protein Viewer:ENSP00000458794.1Re-query CCDS DB by Nucleotide ID:ENST00000572430Re-query CCDS DB by Protein ID:ENSP00000458794
Original member Current member EBI ENST00000571816.5 ENSP00000459324.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000571816.5Link to Ensembl Protein Viewer:ENSP00000459324.1Re-query CCDS DB by Nucleotide ID:ENST00000571816Re-query CCDS DB by Protein ID:ENSP00000459324
Original member Current member EBI ENST00000575111.5 ENSP00000460190.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575111.5Link to Ensembl Protein Viewer:ENSP00000460190.1Re-query CCDS DB by Nucleotide ID:ENST00000575111Re-query CCDS DB by Protein ID:ENSP00000460190
Original member Current member NCBI NM_001320356.2 NP_001307285.1 Accepted alive Link to Nucleotide Sequence:NM_001320356.2Link to Protein Sequence:NP_001307285.1Re-query CCDS DB by Nucleotide ID:NM_001320356Re-query CCDS DB by Protein ID:NP_001307285Link to BLAST:NP_001307285.1
Original member Current member NCBI NM_001320357.2 NP_001307286.1 Accepted alive Link to Nucleotide Sequence:NM_001320357.2Link to Protein Sequence:NP_001307286.1Re-query CCDS DB by Nucleotide ID:NM_001320357Re-query CCDS DB by Protein ID:NP_001307286Link to BLAST:NP_001307286.1
Original member Current member NCBI NM_001320358.2 NP_001307287.1 Accepted alive Link to Nucleotide Sequence:NM_001320358.2Link to Protein Sequence:NP_001307287.1Re-query CCDS DB by Nucleotide ID:NM_001320358Re-query CCDS DB by Protein ID:NP_001307287Link to BLAST:NP_001307287.1
Original member Current member NCBI NM_001320359.2 NP_001307288.1 Accepted alive Link to Nucleotide Sequence:NM_001320359.2Link to Protein Sequence:NP_001307288.1Re-query CCDS DB by Nucleotide ID:NM_001320359Re-query CCDS DB by Protein ID:NP_001307288Link to BLAST:NP_001307288.1
Original member Current member NCBI NM_001320360.2 NP_001307289.1 Accepted alive Link to Nucleotide Sequence:NM_001320360.2Link to Protein Sequence:NP_001307289.1Re-query CCDS DB by Nucleotide ID:NM_001320360Re-query CCDS DB by Protein ID:NP_001307289Link to BLAST:NP_001307289.1
Original member Current member NCBI NM_001320361.2 NP_001307290.1 Accepted alive Link to Nucleotide Sequence:NM_001320361.2Link to Protein Sequence:NP_001307290.1Re-query CCDS DB by Nucleotide ID:NM_001320361Re-query CCDS DB by Protein ID:NP_001307290Link to BLAST:NP_001307290.1
Original member Current member NCBI NM_001370305.1 NP_001357234.1 Accepted alive Link to Nucleotide Sequence:NM_001370305.1Link to Protein Sequence:NP_001357234.1Re-query CCDS DB by Nucleotide ID:NM_001370305Re-query CCDS DB by Protein ID:NP_001357234Link to BLAST:NP_001357234.1
Original member Current member NCBI NM_001375485.1 NP_001362414.1 Accepted alive Link to Nucleotide Sequence:NM_001375485.1Link to Protein Sequence:NP_001362414.1Re-query CCDS DB by Nucleotide ID:NM_001375485Re-query CCDS DB by Protein ID:NP_001362414Link to BLAST:NP_001362414.1
Original member Current member NCBI NM_015528.3 NP_056343.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015528.3Link to Protein Sequence:NP_056343.1Re-query CCDS DB by Nucleotide ID:NM_015528Re-query CCDS DB by Protein ID:NP_056343Link to BLAST:NP_056343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307285.1 350 Q9H6Y7-1 350 100% 0 0
NP_001307286.1 350 Q9H6Y7-1 350 100% 0 0
NP_001307287.1 350 Q9H6Y7-1 350 100% 0 0
NP_001307288.1 350 Q9H6Y7-1 350 100% 0 0
NP_001307289.1 350 Q9H6Y7-1 350 100% 0 0
NP_001307290.1 350 Q9H6Y7-1 350 100% 0 0
NP_001357234.1 350 Q9H6Y7-1 350 100% 0 0
NP_001362414.1 350 Q9H6Y7-1 350 100% 0 0
NP_056343.1 350 Q9H6Y7-1 350 100% 0 0

Chromosomal Locations for CCDS 11060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4940910 4940993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4941077 4941157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4942341 4942466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4942577 4942664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4942851 4942941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4943179 4943284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4943426 4943519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4944558 4944638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4944715 4945016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGCACCCTGCAGCCTTCCCGCTTCCTGTGGTTGTGGCCGCTGTGCTGTGGGGAGCGGCCCCGACCCGGG
GGCTCATTCGAGCGACCTCGGACCACAATGCCAGCATGGACTTTGCAGACCTTCCAGCTCTGTTTGGGGC
TACCTTGAGCCAGGAGGGCCTCCAGGGGTTCCTTGTGGAGGCTCACCCAGACAATGCCTGCAGCCCCATT
GCCCCACCACCCCCAGCCCCGGTCAATGGGTCAGTCTTTATTGCGCTGCTTCGAAGATTCGACTGCAACT
TTGACCTCAAGGTCCTAAATGCCCAGAAGGCTGGATATGGTGCCGCTGTAGTACACAATGTGAATTCCAA
TGAACTTCTGAACATGGTGTGGAATAGTGAGGAAATCCAGCAGCAGATCTGGATCCCGTCTGTATTTATT
GGGGAGAGAAGCTCCGAGTACCTGCGTGCCCTCTTTGTCTACGAGAAGGGGGCTCGGGTGCTTCTGGTTC
CAGACAATACCTTCCCCTTGGGCTATTACCTCATCCCTTTCACAGGGATTGTGGGACTGCTGGTTTTGGC
CATGGGAGCAGTAATGATAGCTCGTTGTATCCAGCACCGGAAACGGCTCCAGCGGAATCGACTTACCAAA
GAGCAACTGAAACAGATTCCTACACATGACTATCAGAAGGGAGACCAGTATGATGTCTGTGCCATTTGCC
TGGATGAATATGAGGATGGGGACAAGCTGCGGGTACTCCCCTGTGCTCATGCCTACCACAGCCGCTGCGT
GGACCCCTGGCTCACTCAGACCCGGAAGACCTGCCCCATTTGCAAGCAGCCTGTTCATCGGGGTCCTGGG
GACGAAGACCAAGAGGAAGAAACTCAAGGGCAAGAGGAGGGTGATGAAGGGGAGCCAAGGGACCACCCTG
CCTCAGAAAGGACCCCACTTTTGGGTTCTAGCCCCACTCTTCCCACCTCCTTTGGTTCCTTAGCCCCAGC
TCCCCTTGTTTTTCCTGGGCCTTCAACAGATCCCCCACTGTCCCCTCCCTCTTCCCCTGTTATCCTGGTC
TAA

Translation (350 aa):
MHPAAFPLPVVVAAVLWGAAPTRGLIRATSDHNASMDFADLPALFGATLSQEGLQGFLVEAHPDNACSPI
APPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFI
GERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLVLAMGAVMIARCIQHRKRLQRNRLTK
EQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPG
DEDQEEETQGQEEGDEGEPRDHPASERTPLLGSSPTLPTSFGSLAPAPLVFPGPSTDPPLSPPSSPVILV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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