NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1101.1 Public Homo sapiens 1 MTX1 24 110 108 CCDS HistoryNCBI Gene:4580Re-query CCDS DB by CCDS ID:1101.1Re-query CCDS DB by GeneID:4580See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1101.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316721.8 ENSP00000317106.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000316721.8Link to Ensembl Protein Viewer:ENSP00000317106.4Re-query CCDS DB by Nucleotide ID:ENST00000316721Re-query CCDS DB by Protein ID:ENSP00000317106
Original member Current member NCBI NM_198883.3 NP_942584.2 Accepted alive Link to Nucleotide Sequence:NM_198883.3Link to Protein Sequence:NP_942584.2Re-query CCDS DB by Nucleotide ID:NM_198883Re-query CCDS DB by Protein ID:NP_942584Link to BLAST:NP_942584.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942584.2 435 Q13505-2 435 100% 0 0

Chromosomal Locations for CCDS 1101.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155208805 155209332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155210346 155210415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155210548 155210627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155212385 155212567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155212694 155212770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155213237 155213391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155213484 155213698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGCTGCTCGGGGGACCCCCCCGCAGTCCCCGCTCGGGGACGAGCCCCAAGGGGCCCTGGAGCAGTACAG
GCCACGTGCAGTTTGGCAAGAGCCCCCAGACCTGGCCCAGGCGCACAAGACCCCGCTCTCCAGAGCCTGC
CGCGCCTTCAGGGGTTCGGGGCTCCACTTGGACGAGGCGCCGTGACTCTCCGAGGCGCGCCGGGCCGACA
GCGCTGTCCCGCTACGTGGGCCACCTCTGGATGGGCCGGCGGCCGCCCTCCCCCGAGGCCCGCGGCCCAG
TCCCCCGCAGTTCAGCTGCCAGTCGGGCCAGAAGAAGCCTCGCCTCCCCGGGGATCTCCCCAGGCCCCCT
GACCGCAACGATCGGAGGGGCGGTGGCGGGGGGCGGGCCCAGGCAGGGGAGGGCAGAAGCACACAAGGAA
GTGTTTCCGGGACAGAGGGTGGGCAAGATGGCGGCGCCCATGGAGCTGTTCTGCTGGTCAGGGGGCTGGG
GGCTGCCGTCAGTGGACCTGGACAGCCTGGCCGTGCTGACCTATGCCAGATTTACTGGTGCTCCACTGAA
GGTACACAAGATCAGCAACCCCTGGCAGAGCCCTTCAGGAACTCTGCCTGCCCTTCGGACCAGTCATGGA
GAGGTCATCTCAGTTCCACACAAGATCATCACCCACCTTCGAAAAGAGGTACATACTTTTTGGATAGACA
CCAAGAACTACGTGGAAGTGACCCGGAAGTGGTATGCAGAGGCTATGCCCTTTCCCCTCAACTTCTTCCT
GCCTGGCCGCATGCAGCGGCAGTACATGGAACGGCTACAGCTGCTGACTGGGGAGCACAGGCCTGAGGAC
GAGGAAGAGCTGGAGAAGGAGCTGTACCGAGAGGCTCGGGAGTGTCTGACCCTGCTCTCTCAGCGCCTGG
GCTCTCAAAAGTTCTTCTTTGGAGATGCCCCTGCCTCCTTGGACGCCTTCGTCTTCAGCTACTTGGCCCT
GCTGCTGCAGGCAAAGCTGCCCAGTGGGAAGCTGCAGGTCCACCTGCGTGGGCTGCACAACCTCTGTGCC
TATTGTACCCACATTCTCAGTCTCTACTTCCCCTGGGATGGAGCTGAGGTACCACCGCAACGCCAGACAC
CAGCAGGCCCAGAGACTGAGGAGGAGCCATACCGGCGCCGGAACCAGATCCTATCTGTGCTGGCAGGACT
GGCAGCCATGGTGGGCTACGCCTTGCTCAGCGGCATTGTCTCCATCCAGCGGGCAACGCCTGCTCGGGCC
CCAGGCACCCGGACCCTGGGCATGGCTGAGGAGGATGAAGAGGAATGA

Translation (435 aa):
MLLGGPPRSPRSGTSPKGPWSSTGHVQFGKSPQTWPRRTRPRSPEPAAPSGVRGSTWTRRRDSPRRAGPT
ALSRYVGHLWMGRRPPSPEARGPVPRSSAASRARRSLASPGISPGPLTATIGGAVAGGGPRQGRAEAHKE
VFPGQRVGKMAAPMELFCWSGGWGLPSVDLDSLAVLTYARFTGAPLKVHKISNPWQSPSGTLPALRTSHG
EVISVPHKIITHLRKEVHTFWIDTKNYVEVTRKWYAEAMPFPLNFFLPGRMQRQYMERLQLLTGEHRPED
EEELEKELYREARECLTLLSQRLGSQKFFFGDAPASLDAFVFSYLALLLQAKLPSGKLQVHLRGLHNLCA
YCTHILSLYFPWDGAEVPPQRQTPAGPETEEEPYRRRNQILSVLAGLAAMVGYALLSGIVSIQRATPARA
PGTRTLGMAEEDEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH