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Report for CCDS11006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11006.1 Public Homo sapiens 17 SLC43A2 24 110 108 CCDS HistoryNCBI Gene:124935Re-query CCDS DB by CCDS ID:11006.1Re-query CCDS DB by GeneID:124935See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301335.10 ENSP00000301335.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301335.10Link to Ensembl Protein Viewer:ENSP00000301335.5Re-query CCDS DB by Nucleotide ID:ENST00000301335Re-query CCDS DB by Protein ID:ENSP00000301335
Original member Current member NCBI NM_152346.3 NP_689559.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152346.3Link to Protein Sequence:NP_689559.1Re-query CCDS DB by Nucleotide ID:NM_152346Re-query CCDS DB by Protein ID:NP_689559Link to BLAST:NP_689559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689559.1 569 Q8N370-1 569 100% 0 0

Chromosomal Locations for CCDS 11006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 1575604 1575765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1576597 1576720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1578250 1578323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1583204 1583336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1585913 1586051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1590802 1590948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1591269 1591471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1591566 1591699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1593187 1593279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1613195 1613271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1614979 1615034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1616562 1616769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 1627715 1627874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGCGCCCACCCTGGCCACTGCCCATCGGCGCCGCTGGTGGATGGCCTGCACGGCCGTGCTGGAGAACC
TCCTCTTCTCGGCAGTCCTCCTGGGCTGGGGCTCGCTGCTCATCATGCTCAAGTCAGAGGGCTTTTACTC
CTACCTGTGTACCGAGCCAGAGAATGTCACCAATGGCACAGTGGGCGGCACAGCAGAGCCGGGGCACGAG
GAGGTGAGCTGGATGAACGGCTGGCTCAGCTGCCAGGCCCAGGACGAGATGCTAAATTTGGCCTTCACTG
TGGGCTCCTTTCTGCTCAGTGCCATCACCCTGCCCCTGGGTATCGTCATGGACAAGTATGGCCCGAGGAA
GCTCAGGCTGCTGGGCAGCGCCTGCTTCGCGGTTTCCTGCTTGCTGATTGCGTACGGAGCAAGTAAACCA
AACGCTCTCTCCGTGCTCATCTTCATCGCCCTGGCTCTGAATGGCTTTGGTGGGATGTGTATGACCTTCA
CCTCATTAACACTGCCCAACATGTTCGGCGACCTTCGGTCCACGTTTATTGCCTTGATGATTGGGTCCTA
CGCCTCCTCGGCAGTCACCTTTCCAGGAATCAAGCTCATCTATGATGCTGGTGTCTCCTTCATCGTCGTC
CTCGTGGTCTGGGCCGGCTGCTCCGGGCTGGTTTTCCTCAACTGCTTCTTTAACTGGCCCCTTGAGCCCT
TCCCGGGGCCGGAGGACATGGACTACTCGGTGAAGATCAAGTTCAGCTGGCTGGGCTTTGACCACAAGAT
CACAGGGAAGCAGTTCTACAAGCAGGTGACCACGGTGGGCCGGCGCCTGAGTGTGGGCAGCTCCATGAGG
AGTGCCAAGGAGCAGGTGGCGCTGCAGGAGGGCCACAAGCTGTGCCTGTCCACCGTCGACCTGGAGGTGA
AGTGCCAGCCGGATGCCGCAGTGGCCCCCTCCTTCATGCACAGCGTGTTCAGCCCCATCCTGCTGCTCAG
CCTGGTCACCATGTGCGTCACGCAGCTGCGGCTCATCTTCTACATGGGGGCTATGAACAACATCCTCAAG
TTCCTGGTCAGCGGCGACCAGAAGACAGTTGGCCTCTACACCTCCATCTTCGGCGTGCTCCAGCTGCTGT
GCCTGCTGACGGCCCCCGTCATTGGCTACATCATGGACTGGAGGCTGAAGGAGTGTGAAGACGCCTCCGA
GGAGCCCGAGGAGAAAGACGCCAACCAAGGCGAGAAGAAAAAGAAGAAGCGGGACCGGCAGATCCAGAAG
ATCACTAATGCCATGCGGGCCTTCGCCTTCACCAACCTGCTGCTCGTGGGCTTTGGGGTGACCTGCCTCA
TTCCCAACCTGCCTCTCCAGATCCTCTCCTTCATCCTGCACACAATCGTGCGAGGATTCATCCACTCCGC
TGTCGGGGGCCTGTACGCTGCCGTGTACCCCTCCACCCAGTTCGGCAGCCTCACGGGACTGCAGTCTCTG
ATCAGCGCGCTCTTCGCCCTTCTGCAGCAGCCGCTGTTTCTGGCCATGATGGGTCCTCTCCAGGGAGACC
CTCTGTGGGTGAACGTGGGGCTGCTCCTTCTCAGCCTGCTGGGCTTCTGCCTCCCGCTCTACCTGATCTG
CTACCGGCGCCAGCTGGAGCGGCAGCTGCAGCAGAGGCAGGAGGATGACAAACTCTTCCTCAAAATCAAC
GGCTCGTCCAACCAGGAGGCCTTCGTGTAG

Translation (569 aa):
MAPTLATAHRRRWWMACTAVLENLLFSAVLLGWGSLLIMLKSEGFYSYLCTEPENVTNGTVGGTAEPGHE
EVSWMNGWLSCQAQDEMLNLAFTVGSFLLSAITLPLGIVMDKYGPRKLRLLGSACFAVSCLLIAYGASKP
NALSVLIFIALALNGFGGMCMTFTSLTLPNMFGDLRSTFIALMIGSYASSAVTFPGIKLIYDAGVSFIVV
LVVWAGCSGLVFLNCFFNWPLEPFPGPEDMDYSVKIKFSWLGFDHKITGKQFYKQVTTVGRRLSVGSSMR
SAKEQVALQEGHKLCLSTVDLEVKCQPDAAVAPSFMHSVFSPILLLSLVTMCVTQLRLIFYMGAMNNILK
FLVSGDQKTVGLYTSIFGVLQLLCLLTAPVIGYIMDWRLKECEDASEEPEEKDANQGEKKKKKRDRQIQK
ITNAMRAFAFTNLLLVGFGVTCLIPNLPLQILSFILHTIVRGFIHSAVGGLYAAVYPSTQFGSLTGLQSL
ISALFALLQQPLFLAMMGPLQGDPLWVNVGLLLLSLLGFCLPLYLICYRRQLERQLQQRQEDDKLFLKIN
GSSNQEAFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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