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Report for CCDS1100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1100.1 Public Homo sapiens 1 MTX1 24 110 108 CCDS HistoryNCBI Gene:4580Re-query CCDS DB by CCDS ID:1100.1Re-query CCDS DB by GeneID:4580See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368376.8 ENSP00000357360.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368376.8Link to Ensembl Protein Viewer:ENSP00000357360.3Re-query CCDS DB by Nucleotide ID:ENST00000368376Re-query CCDS DB by Protein ID:ENSP00000357360
Original member Current member NCBI NM_002455.5 NP_002446.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002455.5Link to Protein Sequence:NP_002446.3Re-query CCDS DB by Nucleotide ID:NM_002455Re-query CCDS DB by Protein ID:NP_002446Link to BLAST:NP_002446.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002446.3 466 Q13505-1 466 100% 0 0

Chromosomal Locations for CCDS 1100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155208805 155209332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155210346 155210415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155210548 155210627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155212127 155212219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155212385 155212567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155212694 155212770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155213237 155213391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155213484 155213698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGCTGCTCGGGGGACCCCCCCGCAGTCCCCGCTCGGGGACGAGCCCCAAGGGGCCCTGGAGCAGTACAG
GCCACGTGCAGTTTGGCAAGAGCCCCCAGACCTGGCCCAGGCGCACAAGACCCCGCTCTCCAGAGCCTGC
CGCGCCTTCAGGGGTTCGGGGCTCCACTTGGACGAGGCGCCGTGACTCTCCGAGGCGCGCCGGGCCGACA
GCGCTGTCCCGCTACGTGGGCCACCTCTGGATGGGCCGGCGGCCGCCCTCCCCCGAGGCCCGCGGCCCAG
TCCCCCGCAGTTCAGCTGCCAGTCGGGCCAGAAGAAGCCTCGCCTCCCCGGGGATCTCCCCAGGCCCCCT
GACCGCAACGATCGGAGGGGCGGTGGCGGGGGGCGGGCCCAGGCAGGGGAGGGCAGAAGCACACAAGGAA
GTGTTTCCGGGACAGAGGGTGGGCAAGATGGCGGCGCCCATGGAGCTGTTCTGCTGGTCAGGGGGCTGGG
GGCTGCCGTCAGTGGACCTGGACAGCCTGGCCGTGCTGACCTATGCCAGATTTACTGGTGCTCCACTGAA
GGTACACAAGATCAGCAACCCCTGGCAGAGCCCTTCAGGAACTCTGCCTGCCCTTCGGACCAGTCATGGA
GAGGTCATCTCAGTTCCACACAAGATCATCACCCACCTTCGAAAAGAGAAGTACAATGCTGATTATGATC
TGTCAGCTCGGCAAGGGGCAGACACCCTGGCCTTCATGTCTCTCCTGGAGGAGAAGTTGCTCCCGGTGCT
GGTACATACTTTTTGGATAGACACCAAGAACTACGTGGAAGTGACCCGGAAGTGGTATGCAGAGGCTATG
CCCTTTCCCCTCAACTTCTTCCTGCCTGGCCGCATGCAGCGGCAGTACATGGAACGGCTACAGCTGCTGA
CTGGGGAGCACAGGCCTGAGGACGAGGAAGAGCTGGAGAAGGAGCTGTACCGAGAGGCTCGGGAGTGTCT
GACCCTGCTCTCTCAGCGCCTGGGCTCTCAAAAGTTCTTCTTTGGAGATGCCCCTGCCTCCTTGGACGCC
TTCGTCTTCAGCTACTTGGCCCTGCTGCTGCAGGCAAAGCTGCCCAGTGGGAAGCTGCAGGTCCACCTGC
GTGGGCTGCACAACCTCTGTGCCTATTGTACCCACATTCTCAGTCTCTACTTCCCCTGGGATGGAGCTGA
GGTACCACCGCAACGCCAGACACCAGCAGGCCCAGAGACTGAGGAGGAGCCATACCGGCGCCGGAACCAG
ATCCTATCTGTGCTGGCAGGACTGGCAGCCATGGTGGGCTACGCCTTGCTCAGCGGCATTGTCTCCATCC
AGCGGGCAACGCCTGCTCGGGCCCCAGGCACCCGGACCCTGGGCATGGCTGAGGAGGATGAAGAGGAATG
A

Translation (466 aa):
MLLGGPPRSPRSGTSPKGPWSSTGHVQFGKSPQTWPRRTRPRSPEPAAPSGVRGSTWTRRRDSPRRAGPT
ALSRYVGHLWMGRRPPSPEARGPVPRSSAASRARRSLASPGISPGPLTATIGGAVAGGGPRQGRAEAHKE
VFPGQRVGKMAAPMELFCWSGGWGLPSVDLDSLAVLTYARFTGAPLKVHKISNPWQSPSGTLPALRTSHG
EVISVPHKIITHLRKEKYNADYDLSARQGADTLAFMSLLEEKLLPVLVHTFWIDTKNYVEVTRKWYAEAM
PFPLNFFLPGRMQRQYMERLQLLTGEHRPEDEEELEKELYREARECLTLLSQRLGSQKFFFGDAPASLDA
FVFSYLALLLQAKLPSGKLQVHLRGLHNLCAYCTHILSLYFPWDGAEVPPQRQTPAGPETEEEPYRRRNQ
ILSVLAGLAAMVGYALLSGIVSIQRATPARAPGTRTLGMAEEDEEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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