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Report for CCDS10996.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10996.1 Public Homo sapiens 17 TLCD3A 24 110 108 CCDS HistoryNCBI Gene:79850Re-query CCDS DB by CCDS ID:10996.1Re-query CCDS DB by GeneID:79850See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10996.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308278.13 ENSP00000312017.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308278.13Link to Ensembl Protein Viewer:ENSP00000312017.7Re-query CCDS DB by Nucleotide ID:ENST00000308278Re-query CCDS DB by Protein ID:ENSP00000312017
Original member Current member NCBI NM_024792.3 NP_079068.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024792.3Link to Protein Sequence:NP_079068.1Re-query CCDS DB by Nucleotide ID:NM_024792Re-query CCDS DB by Protein ID:NP_079068Link to BLAST:NP_079068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079068.1 257 Q8TBR7-2 257 100% 0 0

Chromosomal Locations for CCDS 10996.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 732648 732769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 733098 733181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 737846 738047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 740505 740600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 741301 741570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGCTGCTGACGCTGGCCGGGGGCGCGCTCTTCTTCCCGGGGCTCTTCGCGCTCTGCACCTGGGCGCTGC
GCCGCTCCCAGCCCGGATGGAGCCGCACCGACTGCGTGATGATCAGCACCAGGCTGGTTTCCTCGGTGCA
CGCCGTGCTGGCCACCGGCTCGGGGATCGTCATCATTCGCTCCTGCGACGACGTGATCACCGGCAGGCAC
TGGCTTGCCCGGGAATATGTGTGGTTTCTGATTCCATACATGATCTATGACTCGTACGCCATGTACCTCT
GTGAATGGTGCCGAACCAGAGACCAGAACCGTGCGCCCTCCCTCACTCTTCGAAACTTCCTAAGTCGAAA
CCGCCTCATGATCACACATCATGCGGTCATTCTCTTTGTCCTTGTGCCAGTCGCACAGAGGCTCCGGGGA
GACCTTGGGGACTTCTTTGTCGGCTGCATCTTCACGGCAGAACTGAGCACTCCGTTTGTGTCGCTGGGCA
GGGTTCTGATTCAGCTAAAGCAGCAGCACACCCTTCTGTACAAGGTGAATGGAATCCTCACGCTGGCCAC
CTTCCTTTCCTGCCGGATCCTTCTCTTCCCCTTCATGTACTGGTCCTATGGCCGCCAGCAGGGACTAAGC
CTGCTCCAAGTACCCTTCAGCATCCCATTCTACTGCAACGTGGCCAATGCCTTCCTCGTAGCTCCTCAGA
TCTACTGGTTCTGTCTGCTGTGCAGGAAGGCAGTCCGGCTCTTTGACACTCCCCAAGCCAAAAAGGATGG
CTAA

Translation (257 aa):
MLLTLAGGALFFPGLFALCTWALRRSQPGWSRTDCVMISTRLVSSVHAVLATGSGIVIIRSCDDVITGRH
WLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQNRAPSLTLRNFLSRNRLMITHHAVILFVLVPVAQRLRG
DLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVNGILTLATFLSCRILLFPFMYWSYGRQQGLS
LLQVPFSIPFYCNVANAFLVAPQIYWFCLLCRKAVRLFDTPQAKKDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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