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Report for CCDS10889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10889.1 Public Homo sapiens 16 DDX19A 24 110 108 CCDS HistoryNCBI Gene:55308Re-query CCDS DB by CCDS ID:10889.1Re-query CCDS DB by GeneID:55308See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302243.12 ENSP00000306117.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302243.12Link to Ensembl Protein Viewer:ENSP00000306117.7Re-query CCDS DB by Nucleotide ID:ENST00000302243Re-query CCDS DB by Protein ID:ENSP00000306117
Original member Current member NCBI NM_018332.5 NP_060802.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018332.5Link to Protein Sequence:NP_060802.1Re-query CCDS DB by Nucleotide ID:NM_018332Re-query CCDS DB by Protein ID:NP_060802Link to BLAST:NP_060802.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060802.1 478 Q9NUU7-1 478 100% 0 0

Chromosomal Locations for CCDS 10889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 70346992 70347048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70350557 70350605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70355485 70355535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70356112 70356247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70361418 70361510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70364543 70364645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70365017 70365131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70366085 70366262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70366624 70366861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70370223 70370385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70371372 70371563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 70371925 70371986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCCACCGACTCGTGGGCCCTGGCGGTGGACGAGCAGGAAGCGGCTGTCAAGTCGATGACCAATTTGC
AGATCAAGGAAGAGAAAGTCAAAGCAGATACCAATGGTATTATCAAAACCAGTACCACTGCCGAGAAAAC
AGATGAAGAGGAGAAAGAGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTT
GATAACACAAACCAAGTGGAAGTCCTGCAACGGGATCCAAACTCCCCTCTGTACTCGGTGAAGTCGTTTG
AAGAGCTTCGGCTGAAACCACAGCTTCTCCAGGGAGTCTATGCCATGGGCTTCAATCGACCCTCCAAGAT
ACAAGAGAACGCATTACCCATGATGCTTGCTGAACCCCCACAGAATCTGATTGCCCAGTCTCAGTCTGGC
ACTGGTAAAACAGCTGCCTTTGTCTTAGCCATGCTCAGCCGAGTGGAGCCATCAGACAGATACCCCCAGT
GTCTGTGCCTCTCCCCAACATATGAGCTGGCGCTTCAAACAGGAAAAGTGATTGAGCAGATGGGCAAATT
TTACCCAGAACTGAAGCTTGCCTATGCCGTTCGAGGCAATAAATTGGAAAGAGGCCAGAAGATCAGTGAG
CAGATTGTCATTGGCACCCCTGGGACCGTGCTGGACTGGTGCTCCAAGCTCAAGTTCATTGATCCCAAGA
AAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCCACTCAGGGCCACCAAGATCAGAGCAT
CCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTTTCTCCGCCACCTTTGAAGACTCTGTG
TGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAATGTTATCAAACTGAAGCGTGAGGAAGAGACCCTGG
ATACCATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAGAAGTTCCAGGCCTTGTGTAACCTCTA
CGGGGCCATCACCATTGCTCAAGCCATGATCTTCTGCCATACTCGCAAAACAGCTAGTTGGCTGGCAGCA
GAGCTCTCAAAAGAAGGCCACCAGGTGGCTCTGCTGAGTGGGGAGATGATGGTGGAGCAGAGGGCTGCGG
TGATTGAGCGCTTCCGAGAGGGCAAAGAGAAGGTTTTGGTGACCACCAACGTGTGTGCCCGCGGCATTGA
TGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGGACAAGGACGGGAATCCTGACAATGAG
ACCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAGGGGCCTGGCAGTGAACATGGTGGACA
GCAAGCACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTTAATAAGAAGATAGAAAGATTGGACAC
AGATGATTTGGACGAGATTGAGAAAATAGCCAACTGA

Translation (478 aa):
MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNGIIKTSTTAEKTDEEEKEDRAAQSLLNKLIRSNLV
DNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSG
TGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE
QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV
WKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA
ELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNE
TYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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