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Report for CCDS10782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10782.1 Public Homo sapiens 16 POLR2C 24 110 108 CCDS HistoryNCBI Gene:5432Re-query CCDS DB by CCDS ID:10782.1Re-query CCDS DB by GeneID:5432See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000219252.10 ENSP00000219252.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000219252.10Link to Ensembl Protein Viewer:ENSP00000219252.4Re-query CCDS DB by Nucleotide ID:ENST00000219252Re-query CCDS DB by Protein ID:ENSP00000219252
Original member Current member NCBI NM_032940.3 NP_116558.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032940.3Link to Protein Sequence:NP_116558.1Re-query CCDS DB by Nucleotide ID:NM_032940Re-query CCDS DB by Protein ID:NP_116558Link to BLAST:NP_116558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116558.1 275 P19387 275 100% 0 0

Chromosomal Locations for CCDS 10782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57462725 57462810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57463029 57463078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57465953 57466021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57466175 57466227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57469165 57469293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57469710 57469761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57469961 57470129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57470280 57470354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57470975 57471119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGCCGTACGCCAACCAGCCTACCGTGCGGATCACGGAGCTCACTGACGAGAATGTCAAGTTCATCATCG
AGAACACCGACCTGGCGGTGGCCAATTCGATTCGGAGGGTCTTCATCGCTGAGGTTCCCATAATAGCCAT
TGACTGGGTTCAGATTGATGCCAATTCCTCAGTTCTTCATGATGAATTCATTGCTCACAGGCTTGGATTA
ATTCCCCTCATTAGTGATGACATTGTGGACAAGCTGCAGTACTCTCGGGACTGCACATGTGAGGAGTTCT
GCCCCGAGTGCTCGGTGGAGTTCACCCTCGATGTGCGGTGCAATGAAGACCAGACGCGACATGTCACGTC
TCGAGACCTCATCTCCAACAGCCCCCGGGTCATTCCGGTGACATCCCGGAACCGAGATAATGACCCCAAT
GACTACGTGGAGCAGGATGACATCCTCATCGTCAAGTTGAGAAAGGGCCAGGAGCTGAGACTTCGAGCCT
ATGCCAAAAAGGGCTTTGGCAAGGAGCATGCCAAGTGGAACCCTACTGCAGGGGTGGCTTTTGAATACGA
TCCAGACAATGCCCTGAGGCACACAGTGTACCCCAAGCCCGAGGAATGGCCAAAGAGTGAGTACTCGGAG
CTGGATGAGGATGAGTCGCAGGCTCCCTATGACCCCAACGGCAAGCCAGAAAGGTTTTACTACAATGTGG
AGTCCTGTGGCTCTCTGCGTCCTGAAACCATTGTCCTGTCAGCCCTCTCAGGATTGAAGAAGAAACTGAG
TGATTTACAAACTCAATTAAGCCACGAGATCCAGAGTGATGTGCTAACCATAAATTAA

Translation (275 aa):
MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRLGL
IPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPN
DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSE
LDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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