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Report for CCDS10754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10754.1 Public Homo sapiens 16 SLC6A2 24 110 108 CCDS HistoryNCBI Gene:6530Re-query CCDS DB by CCDS ID:10754.1Re-query CCDS DB by GeneID:6530See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10754.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379906.6 ENSP00000369237.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379906.6Link to Ensembl Protein Viewer:ENSP00000369237.2Re-query CCDS DB by Nucleotide ID:ENST00000379906Re-query CCDS DB by Protein ID:ENSP00000369237
Original member Current member EBI ENST00000568943.6 ENSP00000457473.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000568943.6Link to Ensembl Protein Viewer:ENSP00000457473.1Re-query CCDS DB by Nucleotide ID:ENST00000568943Re-query CCDS DB by Protein ID:ENSP00000457473
Original member Current member NCBI NM_001043.3 NP_001034.1 Accepted alive Link to Nucleotide Sequence:NM_001043.3Link to Protein Sequence:NP_001034.1Re-query CCDS DB by Nucleotide ID:NM_001043Re-query CCDS DB by Protein ID:NP_001034Link to BLAST:NP_001034.1
Original member Current member NCBI NM_001172501.3 NP_001165972.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172501.3Link to Protein Sequence:NP_001165972.1Re-query CCDS DB by Nucleotide ID:NM_001172501Re-query CCDS DB by Protein ID:NP_001165972Link to BLAST:NP_001165972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034.1 617 P23975-1 617 100% 0 0
NP_001165972.1 617 P23975-1 617 100% 0 0

Chromosomal Locations for CCDS 10754.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55656695 55656968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55669565 55669696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55671938 55672175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55685143 55685281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55691918 55692052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55694010 55694113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55695278 55695402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55696225 55696337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55697897 55698025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55698469 55698568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55699554 55699654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55700139 55700306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55701863 55701934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55702323 55702346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGCTTCTGGCGCGGATGAACCCGCAGGTGCAGCCCGAGAACAACGGGGCGGACACGGGTCCAGAGCAGC
CCCTTCGGGCGCGCAAAACTGCGGAGCTGCTGGTGGTGAAGGAGCGCAACGGCGTCCAGTGCCTGCTGGC
GCCCCGCGACGGCGACGCGCAGCCCCGGGAGACCTGGGGCAAGAAGATCGACTTCCTGCTGTCCGTAGTC
GGCTTCGCAGTGGACCTGGCCAACGTGTGGCGCTTCCCCTACCTCTGCTACAAGAACGGCGGCGGTGCCT
TCTTGATCCCGTACACACTGTTCCTTATCATCGCGGGGATGCCCCTGTTCTACATGGAGCTGGCTCTGGG
ACAGTACAACCGGGAGGGGGCTGCCACCGTTTGGAAAATCTGCCCATTCTTCAAAGGCGTTGGCTATGCT
GTCATCCTGATCGCCCTGTACGTTGGCTTCTACTACAACGTCATCATCGCCTGGTCACTCTACTACCTCT
TCTCCTCCTTCACCCTCAACCTGCCCTGGACCGACTGTGGCCACACCTGGAACAGCCCCAACTGTACCGA
CCCCAAGCTCCTCAATGGCTCCGTGCTTGGCAACCACACCAAGTACTCCAAGTACAAGTTCACGCCGGCA
GCCGAGTTTTATGAGCGTGGTGTCCTGCACCTTCACGAGAGCAGCGGGATTCATGACATCGGCCTGCCCC
AGTGGCAGCTCTTGCTCTGTCTGATGGTCGTCGTCATCGTCTTGTATTTTAGCCTCTGGAAAGGGGTGAA
GACATCAGGAAAGGTGGTGTGGATCACAGCCACGCTGCCTTACTTCGTGCTGTTCGTGCTCCTGGTCCAT
GGCGTCACGCTGCCCGGAGCCTCCAATGGCATCAATGCCTACCTGCACATCGACTTCTACCGCTTGAAAG
AGGCCACGGTATGGATTGATGCCGCAACTCAGATATTTTTTTCCTTGGGGGCTGGATTTGGAGTATTGAT
TGCATTTGCCAGTTACAACAAATTTGACAACAACTGTTACAGGGATGCCCTGCTGACCAGCAGCATCAAC
TGTATCACCAGCTTCGTCTCTGGGTTCGCCATCTTCTCCATCCTTGGTTACATGGCCCATGAACACAAGG
TCAACATTGAGGATGTGGCCACAGAAGGAGCTGGCCTAGTGTTCATCCTGTATCCAGAGGCCATTTCTAC
CCTGTCTGGATCTACATTCTGGGCTGTTGTGTTTTTCGTCATGCTCCTGGCGCTGGGCCTTGACAGCTCA
ATGGGAGGCATGGAGGCTGTCATCACGGGCCTGGCAGATGACTTCCAGGTCCTGAAGCGACACCGGAAAC
TCTTCACATTTGGCGTCACCTTCAGCACTTTCCTTCTCGCCCTGTTCTGCATAACCAAGGGTGGAATTTA
CGTCTTGACCCTCCTGGACACCTTTGCTGCGGGCACCTCCATCCTTTTTGCTGTCCTCATGGAAGCCATC
GGAGTTTCCTGGTTTTATGGAGTGGACAGGTTCAGCAACGACATCCAGCAGATGATGGGGTTCAGGCCGG
GTCTATACTGGAGACTGTGCTGGAAGTTCGTCAGTCCTGCCTTCCTCCTGTTCGTGGTTGTGGTCAGCAT
CATCAACTTCAAGCCACTCACCTACGACGACTACATCTTCCCGCCCTGGGCCAACTGGGTGGGGTGGGGC
ATCGCCCTGTCCTCCATGGTCCTGGTGCCCATCTACGTCATCTATAAGTTCCTCAGCACGCAGGGCTCTC
TTTGGGAGAGACTGGCCTATGGCATCACGCCAGAGAACGAGCACCACCTGGTGGCTCAGAGGGACATCAG
ACAGTTCCAGTTGCAACACTGGCTGGCCATCTGA

Translation (617 aa):
MLLARMNPQVQPENNGADTGPEQPLRARKTAELLVVKERNGVQCLLAPRDGDAQPRETWGKKIDFLLSVV
GFAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELALGQYNREGAATVWKICPFFKGVGYA
VILIALYVGFYYNVIIAWSLYYLFSSFTLNLPWTDCGHTWNSPNCTDPKLLNGSVLGNHTKYSKYKFTPA
AEFYERGVLHLHESSGIHDIGLPQWQLLLCLMVVVIVLYFSLWKGVKTSGKVVWITATLPYFVLFVLLVH
GVTLPGASNGINAYLHIDFYRLKEATVWIDAATQIFFSLGAGFGVLIAFASYNKFDNNCYRDALLTSSIN
CITSFVSGFAIFSILGYMAHEHKVNIEDVATEGAGLVFILYPEAISTLSGSTFWAVVFFVMLLALGLDSS
MGGMEAVITGLADDFQVLKRHRKLFTFGVTFSTFLLALFCITKGGIYVLTLLDTFAAGTSILFAVLMEAI
GVSWFYGVDRFSNDIQQMMGFRPGLYWRLCWKFVSPAFLLFVVVVSIINFKPLTYDDYIFPPWANWVGWG
IALSSMVLVPIYVIYKFLSTQGSLWERLAYGITPENEHHLVAQRDIRQFQLQHWLAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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