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Report for CCDS10750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10750.1 Public Homo sapiens 16 IRX3 24 110 108 CCDS HistoryNCBI Gene:79191Re-query CCDS DB by CCDS ID:10750.1Re-query CCDS DB by GeneID:79191See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10750.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329734.4 ENSP00000331608.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329734.4Link to Ensembl Protein Viewer:ENSP00000331608.3Re-query CCDS DB by Nucleotide ID:ENST00000329734Re-query CCDS DB by Protein ID:ENSP00000331608
Original member Current member NCBI NM_024336.3 NP_077312.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024336.3Link to Protein Sequence:NP_077312.2Re-query CCDS DB by Nucleotide ID:NM_024336Re-query CCDS DB by Protein ID:NP_077312Link to BLAST:NP_077312.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077312.2 501 P78415 501 100% 0 0

Chromosomal Locations for CCDS 10750.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 54283686 54283740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 54284246 54284312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 54284497 54285613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 54285784 54286050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGTCCTTCCCCCAGCTGGGATACCAATACATCCGCCCGCTTTACCCGTCCGAGCGCCCGGGGGCCGCTG
GCGGCAGCGGCGGCAGCGCGGGGGCCCGGGGCGGCCTGGGTGCCGGAGCCTCGGAGCTGAACGCCTCGGG
GTCCCTGTCCAACGTGCTCTCGTCCGTGTACGGGGCGCCCTACGCCGCGGCCGCTGCGGCCGCCGCCGCC
CAAGGCTACGGCGCCTTCCTGCCCTACGCCGCGGAGCTGCCCATCTTCCCGCAGCTGGGCGCGCAGTATG
AGCTGAAGGACAGCCCCGGGGTGCAGCATCCGGCCGCGGCTGCCGCGTTTCCGCACCCGCACCCCGCCTT
CTACCCGTATGGCCAGTACCAGTTCGGGGACCCGTCCCGTCCCAAGAACGCCACCAGGGAGAGCACCAGC
ACGCTGAAGGCCTGGCTCAACGAGCACCGCAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGG
CCATCATCACCAAGATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAAGAA
GGAGAATAAGATGACTTGGGCGCCTCGCAGCCGCACTGACGAGGAGGGAAACGCTTATGGGAGCGAGCGC
GAGGAGGAAGACGAAGAGGAGGACGAGGAGGACGGCAAACGCGAGCTAGAGCTGGAGGAGGAGGAGCTCG
GGGGGGAGGAGGAGGACACGGGGGGCGAGGGCCTGGCTGACGACGACGAGGACGAGGAGATCGATTTGGA
GAACTTAGACGGCGCGGCCACCGAGCCTGAGCTGTCCCTGGCTGGGGCGGCGCGCAGGGATGGCGACCTA
GGCCTGGGACCCATTTCGGACTCCAAAAATAGCGACTCGGAAGATAGCTCTGAGGGCTTAGAGGACCGGC
CACTACCGGTCCTGAGTCTGGCTCCAGCGCCACCACCAGTGGCCGTGGCCTCGCCGTCTCTGCCGTCGCC
CCCCGTGAGCCTGGACCCCTGCGCTCCCGCACCAGCCCCCGCCTCCGCCCTGCAGAAGCCCAAGATCTGG
TCCCTCGCGGAGACTGCCACAAGCCCGGACAACCCGCGCCGCTCGCCTCCCGGCGCGGGGGGGTCTCCAC
CGGGGGCAGCGGTCGCGCCTTCCGCCCTGCAGCTCTCTCCGGCCGCCGCCGCCGCCGCCGCTCACAGACT
GGTCTCAGCGCCGCTGGGCAAGTTCCCGGCTTGGACCAACCGGCCGTTTCCAGGCCCACCGCCCGGCCCC
CGCCTGCACCCGCTCTCCCTGCTGGGCTCTGCCCCTCCGCACCTGCTGGGACTTCCCGGAGCCGCGGGCC
ACCCGGCTGCCGCCGCCGCCTTCGCTCGGCCAGCGGAGCCCGAAGGCGGAACAGATCGCTGTAGTGCCTT
GGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGCCCGTGCCCAGGCGGCCCCAGAACCATCTGGAC
GCCGCCCTGGTCTTATCGGCTCTCTCCTCATCCTAG

Translation (501 aa):
MSFPQLGYQYIRPLYPSERPGAAGGSGGSAGARGGLGAGASELNASGSLSNVLSSVYGAPYAAAAAAAAA
QGYGAFLPYAAELPIFPQLGAQYELKDSPGVQHPAAAAAFPHPHPAFYPYGQYQFGDPSRPKNATRESTS
TLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRSRTDEEGNAYGSER
EEEDEEEDEEDGKRELELEEEELGGEEEDTGGEGLADDDEDEEIDLENLDGAATEPELSLAGAARRDGDL
GLGPISDSKNSDSEDSSEGLEDRPLPVLSLAPAPPPVAVASPSLPSPPVSLDPCAPAPAPASALQKPKIW
SLAETATSPDNPRRSPPGAGGSPPGAAVAPSALQLSPAAAAAAAHRLVSAPLGKFPAWTNRPFPGPPPGP
RLHPLSLLGSAPPHLLGLPGAAGHPAAAAAFARPAEPEGGTDRCSALEVEKKLLKTAFQPVPRRPQNHLD
AALVLSALSSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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