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Report for CCDS10747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10747.1 Public Homo sapiens 16 SALL1 24 110 108 CCDS HistoryNCBI Gene:6299Re-query CCDS DB by CCDS ID:10747.1Re-query CCDS DB by GeneID:6299See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10747.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251020.9 ENSP00000251020.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251020.9Link to Ensembl Protein Viewer:ENSP00000251020.4Re-query CCDS DB by Nucleotide ID:ENST00000251020Re-query CCDS DB by Protein ID:ENSP00000251020
Original member Current member EBI ENST00000440970.6 ENSP00000407914.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440970.6Link to Ensembl Protein Viewer:ENSP00000407914.2Re-query CCDS DB by Nucleotide ID:ENST00000440970Re-query CCDS DB by Protein ID:ENSP00000407914
Original member Current member EBI ENST00000685868.1 ENSP00000509873.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685868.1Link to Ensembl Protein Viewer:ENSP00000509873.1Re-query CCDS DB by Nucleotide ID:ENST00000685868Re-query CCDS DB by Protein ID:ENSP00000509873
Original member Current member NCBI NM_002968.3 NP_002959.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002968.3Link to Protein Sequence:NP_002959.2Re-query CCDS DB by Nucleotide ID:NM_002968Re-query CCDS DB by Protein ID:NP_002959Link to BLAST:NP_002959.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002959.2 1324 Q9NSC2-1 1324 100% 0 0

Chromosomal Locations for CCDS 10747.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 51137112 51137552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 51138688 51142145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 51151166 51151241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3975 nt):
ATGTCGCGGAGGAAGCAAGCGAAGCCTCAACATTTCCAATCCGACCCCGAAGTGGCCTCGCTCCCCCGGC
GAGATGGAGACACAGAAAAGGGTCAACCGAGTCGCCCTACTAAGAGCAAGGATGCCCACGTCTGTGGCCG
GTGCTGTGCCGAGTTCTTTGAATTATCAGATCTTCTGCTCCACAAGAAGAACTGTACTAAAAATCAATTA
GTTTTAATCGTAAATGAAAATCCAGCCTCCCCACCCGAAACCTTCTCCCCCAGCCCCCCTCCTGATAATC
CTGATGAACAAATGAATGACACAGTTAACAAAACAGATCAAGTGGACTGCAGCGACCTTTCAGAACACAA
CGGACTTGACAGGGAAGAGTCCATGGAGGTGGAGGCCCCGGTTGCTAACAAAAGCGGCAGCGGCACTTCC
AGCGGCAGCCACAGCAGTACCGCCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCA
GCTCCTCCACAGGTACCTCAGCGATCACAACCTCTCTACCTCAACTCGGGGACCTGACAACACTGGGCAA
CTTCTCCGTAATCAACAGCAACGTCATCATCGAGAACCTCCAGAGCACCAAGGTGGCGGTGGCCCAGTTC
TCCCAGGAAGCGAGGTGCGGCGGGGCCTCTGGGGGCAAGCTGGCCGTCCCAGCCCTCATGGAACAACTCC
TAGCTCTGCAGCAGCAGCAGATCCACCAGCTGCAATTGATCGAACAGATTCGTCACCAAATATTGCTGTT
GGCTTCTCAGAATGCAGACTTGCCAACATCTTCTAGTCCTTCTCAAGGTACTTTACGAACATCTGCCAAC
CCCTTGTCCACGCTAAGTTCCCATTTATCTCAGCAGCTGGCAGCAGCAGCTGGATTGGCACAGAGCCTCG
CCAGCCAATCTGCCAGCATTAGTGGTGTGAAACAGCTACCCCCAATCCAGCTACCTCAGAGCAGTTCTGG
CAACACCATCATTCCATCCAACAGCGGCTCTTCTCCCAATATGAACATATTGGCAGCGGCAGTTACCACC
CCGTCCTCTGAAAAAGTGGCTTCAAGTGCTGGGGCCTCCCATGTCAGCAACCCAGCGGTCTCATCATCGT
CCTCACCAGCTTTTGCAATAAGCAGTTTATTAAGTCCTGCGTCTAATCCACTTCTACCTCAGCAAGCCTC
CGCTAACTCGGTTTTCCCCAGCCCTTTGCCCAACATCGGAACAACTGCAGAGGATTTAAACTCCTTGTCT
GCCTTGGCCCAGCAAAGAAAAAGCAAGCCACCAAATGTCACTGCCTTTGAAGCGAAAAGTACTTCCGATG
AGGCATTCTTCAAACACAAGTGCAGGTTCTGCGCGAAGGTCTTTGGGAGTGACAGTGCCTTGCAGATCCA
CTTGCGTTCCCATACCGGAGAGAGGCCATTCAAGTGCAACATCTGCGGGAACAGGTTCTCCACCAAGGGG
AATCTGAAAGTCCACTTTCAGCGCCACAAAGAGAAATACCCTCATATCCAGATGAACCCCTATCCTGTGC
CTGAGCATTTGGACAATATCCCCACGAGTACTGGCATCCCATATGGCATGTCCATCCCTCCAGAGAAGCC
AGTCACCAGCTGGCTAGACACCAAACCAGTCCTGCCTACTCTGACCACTTCAGTCGGCCTGCCGTTGCCC
CCAACCCTCCCAAGCCTCATACCCTTCATCAAGACGGAAGAGCCAGCCCCCATCCCCATCAGCCATTCTG
CCACCAGCCCCCCAGGCTCAGTCAAAAGTGACTCCGGGGGCCCTGAGTCAGCCACAAGAAACCTAGGTGG
GCTCCCAGAGGAAGCCGAAGGGTCCACTCTGCCACCCTCTGGTGGCAAAAGCGAAGAGAGTGGCATGGTC
ACCAACTCAGTCCCGACGGCGAGCAGTAGCGTCCTGAGCTCCCCAGCGGCAGACTGCGGCCCCGCGGGCA
GTGCCACCACCTTCACCAACCCTTTGTTGCCGCTCATGTCCGAGCAGTTCAAGGCCAAGTTTCCTTTTGG
GGGACTCCTGGACTCAGCTCAGGCATCAGAGACGTCCAAGCTTCAGCAACTGGTAGAAAACATTGACAAG
AAGGCCACTGACCCCAATGAGTGCATCATCTGCCACCGGGTTCTCAGCTGCCAGAGCGCCTTGAAAATGC
ACTACAGGACACACACTGGGGAGAGGCCCTTTAAGTGTAAGATCTGTGGCCGGGCTTTCACCACGAAAGG
GAATCTTAAAACCCACTACAGTGTCCATCGTGCTATGCCCCCGCTCAGAGTCCAGCATTCCTGCCCCATC
TGCCAGAAGAAGTTCACGAACGCTGTGGTCCTGCAGCAGCACATCCGAATGCATATGGGAGGCCAGATCC
CCAACACCCCAGTCCCCGACAGCTACTCTGAGTCCATGGAGTCTGACACAGGTTCCTTTGATGAGAAAAA
TTTTGATGACCTAGACAACTTCTCTGATGAAAACATGGAAGACTGTCCTGAGGGCAGCATCCCTGATACA
CCTAAGTCTGCAGACGCCTCCCAAGACAGCTTATCCTCTTCGCCTTTGCCCCTCGAGATGTCGAGCATCG
CTGCTTTGGAAAATCAGATGAAGATGATCAATGCTGGCCTGGCAGAGCAGCTACAGGCCAGCCTGAAGTC
AGTGGAGAATGGGTCCATCGAGGGGGATGTCCTGACCAATGATTCATCCTCAGTGGGTGGTGACATGGAA
AGCCAAAGTGCTGGCAGCCCAGCCATCTCAGAGTCTACCTCTTCCATGCAGGCTCTGTCCCCGTCCAACA
GCACGCAGGAGTTCCACAAGTCACCCAGCATTGAGGAGAAACCACAGAGAGCGGTCCCAAGCGAGTTTGC
CAATGGTTTGTCTCCCACCCCAGTGAATGGTGGGGCTTTGGATTTGACATCTAGTCACGCAGAGAAAATC
ATCAAAGAAGATTCTTTGGGGATCCTCTTCCCTTTTAGAGACCGGGGTAAATTTAAAAACACTGCTTGTG
ACATTTGTGGCAAAACATTTGCTTGTCAGAGTGCCTTGGACATTCACTATAGAAGTCATACCAAAGAGAG
ACCATTTATTTGCACAGTTTGCAATCGTGGCTTTTCCACAAAGGGTAATTTGAAGCAGCACATGTTGACA
CATCAGATGCGAGATCTGCCATCCCAGCTCTTTGAGCCCAGTTCCAACCTTGGCCCCAATCAGAACTCAG
CGGTGATTCCCGCCAACTCGTTGTCATCTCTCATCAAGACAGAGGTCAACGGCTTCGTGCATGTTTCTCC
TCAGGACAGTAAGGACACCCCCACCAGTCACGTCCCGTCTGGGCCTCTGTCTTCCTCTGCCACATCCCCA
GTTCTGCTCCCTGCTCTGCCCAGGAGAACTCCCAAGCAGCACTACTGCAACACATGTGGCAAAACCTTCT
CCTCATCGAGTGCCCTGCAGATTCACGAGAGAACTCACACTGGAGAGAAACCCTTTGCTTGCACTATTTG
TGGAAGAGCTTTCACGACTAAAGGCAATCTTAAGGTACACATGGGCACTCACATGTGGAATAGCACCCCT
GCACGACGGGGTCGGCGGCTCTCTGTGGATGGCCCCATGACATTTCTAGGAGGCAATCCCGTCAAGTTCC
CAGAAATGTTCCAGAAGGATTTGGCGGCAAGATCAGGAAGTGGGGATCCTTCCAGCTTCTGGAATCAGTA
TGCAGCAGCGCTCTCCAACGGGCTGGCGATGAAGGCCAACGAGATCTCCGTCATTCAGAACGGTGGCATC
CCTCCAATTCCTGGAAGCCTCGGCAGTGGGAACAGCTCACCTGTTAGTGGGCTGACGGGAAACCTGGAGA
GGCTCCAGAACTCAGAGCCCAATGCTCCCCTGGCCGGCCTGGAGAAAATGGCAAGCAGTGAGAACGGAAC
CAACTTCCGCTTCACCCGCTTCGTGGAGGACAGCAAGGAGATCGTCACGAGTTAA

Translation (1324 aa):
MSRRKQAKPQHFQSDPEVASLPRRDGDTEKGQPSRPTKSKDAHVCGRCCAEFFELSDLLLHKKNCTKNQL
VLIVNENPASPPETFSPSPPPDNPDEQMNDTVNKTDQVDCSDLSEHNGLDREESMEVEAPVANKSGSGTS
SGSHSSTAPSSSSSSSSSSGGGGSSSTGTSAITTSLPQLGDLTTLGNFSVINSNVIIENLQSTKVAVAQF
SQEARCGGASGGKLAVPALMEQLLALQQQQIHQLQLIEQIRHQILLLASQNADLPTSSSPSQGTLRTSAN
PLSTLSSHLSQQLAAAAGLAQSLASQSASISGVKQLPPIQLPQSSSGNTIIPSNSGSSPNMNILAAAVTT
PSSEKVASSAGASHVSNPAVSSSSSPAFAISSLLSPASNPLLPQQASANSVFPSPLPNIGTTAEDLNSLS
ALAQQRKSKPPNVTAFEAKSTSDEAFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKG
NLKVHFQRHKEKYPHIQMNPYPVPEHLDNIPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLP
PTLPSLIPFIKTEEPAPIPISHSATSPPGSVKSDSGGPESATRNLGGLPEEAEGSTLPPSGGKSEESGMV
TNSVPTASSSVLSSPAADCGPAGSATTFTNPLLPLMSEQFKAKFPFGGLLDSAQASETSKLQQLVENIDK
KATDPNECIICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPI
CQKKFTNAVVLQQHIRMHMGGQIPNTPVPDSYSESMESDTGSFDEKNFDDLDNFSDENMEDCPEGSIPDT
PKSADASQDSLSSSPLPLEMSSIAALENQMKMINAGLAEQLQASLKSVENGSIEGDVLTNDSSSVGGDME
SQSAGSPAISESTSSMQALSPSNSTQEFHKSPSIEEKPQRAVPSEFANGLSPTPVNGGALDLTSSHAEKI
IKEDSLGILFPFRDRGKFKNTACDICGKTFACQSALDIHYRSHTKERPFICTVCNRGFSTKGNLKQHMLT
HQMRDLPSQLFEPSSNLGPNQNSAVIPANSLSSLIKTEVNGFVHVSPQDSKDTPTSHVPSGPLSSSATSP
VLLPALPRRTPKQHYCNTCGKTFSSSSALQIHERTHTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTP
ARRGRRLSVDGPMTFLGGNPVKFPEMFQKDLAARSGSGDPSSFWNQYAAALSNGLAMKANEISVIQNGGI
PPIPGSLGSGNSSPVSGLTGNLERLQNSEPNAPLAGLEKMASSENGTNFRFTRFVEDSKEIVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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