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Report for CCDS10676.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10676.2 Public Homo sapiens 16 TBC1D10B 24 110 108 CCDS HistoryNCBI Gene:26000Re-query CCDS DB by CCDS ID:10676.2Re-query CCDS DB by GeneID:26000See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 10676.1
The coding region has been updated to extend the N-terminus based on the presence of an upstream translation start codon, which is supported by available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10676.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409939.8 ENSP00000386538.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409939.8Link to Ensembl Protein Viewer:ENSP00000386538.3Re-query CCDS DB by Nucleotide ID:ENST00000409939Re-query CCDS DB by Protein ID:ENSP00000386538
Original member Current member NCBI NM_015527.4 NP_056342.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015527.4Link to Protein Sequence:NP_056342.3Re-query CCDS DB by Nucleotide ID:NM_015527Re-query CCDS DB by Protein ID:NP_056342Link to BLAST:NP_056342.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056342.3 808 Q4KMP7-1 808 100% 0 0

Chromosomal Locations for CCDS 10676.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30357944 30358573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30358663 30358817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30359172 30359361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30359538 30359603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30359727 30359841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30364900 30365006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30365105 30365212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30365495 30365594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30369228 30370183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGGAGACGGGCACGGCGCCCCTGGTGGCCCCGCCGCGCCGTCATGGCGCCCCCGCGGCCCCCTCGCCGC
CGCCCCGGGGTTCCCGGGCCGGGCCCGTCGTGGTGGTGGCTCCGGGACCTCCAGTGACTACGGCCACTTC
GGCCCCCGTCACCCTGGTGGCCCCCGGGGAGGCGCGGCCCGCCTGGGTCCCGGGGTCGGCCGAGACCTCT
GCTCCGGCCCCGGCCCCAGCCCCGGCCCCAGCCCCGGCTGTCACGGGCAGCACGGTGGTGGTGCTGACCC
TGGAGGCCTCGCCCGAAGCCCCAAAGCCGCAGCTCCCCTCCGGCCCGGAATCCCCAGAGCCCGCGGCAGT
GGCTGGAGTTGAGACATCGAGGGCTCTGGCCGCAGGGGCAGACTCGCCGAAGACAGAGGAGGCTCGACCC
TCACCCGCCCCAGGACCAGGGACCCCCACCGGGACCCCTACCAGGACCCCTTCCAGAACGGCTCCTGGTG
CCCTGACCGCCAAACCCCCGCTTGCCCCCAAGCCGGGAACCACAGTGGCCTCAGGAGTGACTGCACGGAG
TGCATCAGGACAAGTGACAGGTGGGCATGGAGCTGCCGCAGCAACATCAGCATCAGCAGGACAGGCTCCT
GAGGACCCCTCAGGCCCTGGCACAGGCCCCTCTGGGACTTGTGAGGCTCCGGTAGCTGTCGTGACCGTGA
CCCCAGCTCCGGAGCCTGCTGAAAACTCTCAAGACCTGGGCTCCACGTCCAGCCTGGGACCTGGCATCTC
TGGGCCTCGAGGGCAGGCCCCGGACACGCTGAGTTACTTGGACTCCGTGAGCCTCATGTCTGGGACCTTG
GAGTCCTTGGCGGATGATGTGAGCTCCATGGGCTCAGATTCAGAGATAAACGGGCTGGCCCTGCGCAAGA
CGGACAAGTATGGCTTCCTTGGGGGCAGCCAGTACTCGGGCAGCCTAGAGAGCTCCATTCCCGTGGACGT
GGCTCGGCAGCGGGAGCTCAAATGGCTGGACATGTTCAGTAACTGGGATAAGTGGCTGTCACGGCGATTC
CAGAAGGTGAAGCTGCGCTGCCGGAAGGGGATCCCCTCCTCTCTCAGAGCCAAAGCCTGGCAGTACCTGT
CTAATAGCAAGGAACTTCTGGAGCAGAACCCAGGAAAGTTTGAGGAGCTGGAACGGGCTCCTGGGGACCC
CAAGTGGCTGGATGTGATTGAGAAGGACCTGCACCGCCAGTTCCCTTTCCACGAGATGTTTGCTGCTCGA
GGGGGGCATGGGCAACAGGACCTGTACCGAATCCTGAAGGCCTACACCATCTACCGGCCTGACGAGGGTT
ACTGCCAGGCCCAGGCCCCCGTGGCTGCGGTCCTGCTCATGCACATGCCTGCGGAGCAAGCCTTTTGGTG
CCTGGTGCAGATCTGCGACAAGTACCTCCCAGGTTACTACAGTGCAGGGCTGGAGGCCATTCAGCTGGAC
GGGGAGATCTTTTTTGCACTCCTGCGCCGGGCCTCCCCGCTGGCGCATCGCCACCTGCGGCGGCAGCGCA
TTGACCCTGTGCTCTACATGACGGAGTGGTTCATGTGCATCTTCGCCCGCACCCTGCCCTGGGCGTCGGT
GCTGCGTGTCTGGGACATGTTTTTCTGTGAAGGCGTTAAGATCATCTTCCGGGTGGCCCTGGTCCTGCTG
CGCCACACGCTGGGCTCAGTGGAGAAGCTGCGCTCCTGCCAAGGCATGTATGAGACCATGGAGCAGCTGC
GTAACCTGCCCCAGCAGTGCATGCAGGAAGACTTCCTGGTGCATGAGGTGACCAATCTGCCGGTGACAGA
AGCACTGATTGAGCGGGAGAATGCAGCCCAGCTCAAGAAGTGGCGGGAAACGCGGGGGGAGCTGCAGTAT
CGGCCCTCACGGCGACTGCATGGGTCCCGGGCCATCCACGAGGAGCGCCGGCGGCAACAGCCACCCCTGG
GCCCCTCCTCCAGCCTCCTCAGCCTCCCTGGCCTCAAGAGCCGAGGCTCCCGGGCAGCTGGAGGGGCCCC
GTCCCCGCCGCCCCCCGTCCGCAGAGCCAGTGCTGGGCCTGCCCCAGGGCCTGTGGTCACTGCTGAGGGA
CTGCATCCATCCCTTCCCTCACCCACTGGCAATAGCACCCCCTTGGGTTCCAGCAAGGAGACCCGGAAGC
AGGAGAAGGAGCGGCAGAAACAGGAGAAGGAGCGGCAGAAACAGGAGAAGGAGCGGGAGAAGGAGCGGCA
GAAGCAGGAGAAAGAGCGAGAGAAGCAGGAAAAGGAGCGAGAGAAGCAGGAGAAGGAGCGGCAGAAGCAG
GAGAAGAAGGCTCAAGGCCGGAAGCTTTCGCTGCGTCGAAAGGCAGATGGGCCCCCAGGCCCCCATGATG
GTGGGGACAGGCCCTCAGCCGAGGCCCGGCAGGACGCTTACTTCTGA

Translation (808 aa):
METGTAPLVAPPRRHGAPAAPSPPPRGSRAGPVVVVAPGPPVTTATSAPVTLVAPGEARPAWVPGSAETS
APAPAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLPSGPESPEPAAVAGVETSRALAAGADSPKTEEARP
SPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARSASGQVTGGHGAAAATSASAGQAP
EDPSGPGTGPSGTCEAPVAVVTVTPAPEPAENSQDLGSTSSLGPGISGPRGQAPDTLSYLDSVSLMSGTL
ESLADDVSSMGSDSEINGLALRKTDKYGFLGGSQYSGSLESSIPVDVARQRELKWLDMFSNWDKWLSRRF
QKVKLRCRKGIPSSLRAKAWQYLSNSKELLEQNPGKFEELERAPGDPKWLDVIEKDLHRQFPFHEMFAAR
GGHGQQDLYRILKAYTIYRPDEGYCQAQAPVAAVLLMHMPAEQAFWCLVQICDKYLPGYYSAGLEAIQLD
GEIFFALLRRASPLAHRHLRRQRIDPVLYMTEWFMCIFARTLPWASVLRVWDMFFCEGVKIIFRVALVLL
RHTLGSVEKLRSCQGMYETMEQLRNLPQQCMQEDFLVHEVTNLPVTEALIERENAAQLKKWRETRGELQY
RPSRRLHGSRAIHEERRRQQPPLGPSSSLLSLPGLKSRGSRAAGGAPSPPPPVRRASAGPAPGPVVTAEG
LHPSLPSPTGNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQKQ
EKKAQGRKLSLRRKADGPPGPHDGGDRPSAEARQDAYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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