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Report for CCDS10561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10561.1 Public Homo sapiens 16 BMERB1 24 110 108 CCDS HistoryNCBI Gene:89927Re-query CCDS DB by CCDS ID:10561.1Re-query CCDS DB by GeneID:89927See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10561.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300006.9 ENSP00000300006.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300006.9Link to Ensembl Protein Viewer:ENSP00000300006.4Re-query CCDS DB by Nucleotide ID:ENST00000300006Re-query CCDS DB by Protein ID:ENSP00000300006
Original member Current member NCBI NM_033201.3 NP_149978.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033201.3Link to Protein Sequence:NP_149978.1Re-query CCDS DB by Nucleotide ID:NM_033201Re-query CCDS DB by Protein ID:NP_149978Link to BLAST:NP_149978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149978.1 204 Q96MC5-1 204 100% 0 0

Chromosomal Locations for CCDS 10561.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 15434654 15434759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15515305 15515428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15567983 15568056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15581217 15581331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15583156 15583238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 15586717 15586829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGAATTAAAGCAATCTTTGTCCACCCATCTGGAAGCCGAGAAGCCTCTGAGGCGCTATGGGGCGGTGG
AGGAGACGGCTTGGAAAACGGAGAGACTGGGGAGAAATCAGCTGGACATCATCTCCATGGCGGAGACAAC
CATGATGCCAGAGGAGATTGAGCTGGAGATGGCAAAAATTCAGCGTCTCCGGGAAGTCTTGGTCCGCCGG
GAGTCTGAGCTCAGGTTCATGATGGATGACATCCAGCTCTGCAAGGACATCATGGACTTGAAGCAGGAGC
TGCAGAACTTGGTCGCCATCCCAGAAAAAGAAAAAACCAAACTGCAGAAGCAGAGAGAGGATGAGCTAAT
CCAGAAGATCCACAAACTGGTGCAGAAGAGAGACTTCCTGGTGGACGATGCGGAGGTCGAGCGGTTAAGG
GAGCAAGAAGAAGACAAGGAAATGGCTGATTTCCTGAGAATCAAGTTAAAACCTCTAGACAAAGTAACCA
AATCTCCAGCCAGCTCCCGGGCAGAGAAGAAAGCAGAGCCCCCACCTAGCAAGCCCACGGTGGCCAAGAC
GGGGCTGGCACTGATCAAGGATTGTTGCGGGGCCACCCAGTGCAACATCATGTAG

Translation (204 aa):
MELKQSLSTHLEAEKPLRRYGAVEETAWKTERLGRNQLDIISMAETTMMPEEIELEMAKIQRLREVLVRR
ESELRFMMDDIQLCKDIMDLKQELQNLVAIPEKEKTKLQKQREDELIQKIHKLVQKRDFLVDDAEVERLR
EQEEDKEMADFLRIKLKPLDKVTKSPASSRAEKKAEPPPSKPTVAKTGLALIKDCCGATQCNIM


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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