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Report for CCDS10456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10456.1 Public Homo sapiens 16 SYNGR3 24 110 108 CCDS HistoryNCBI Gene:9143Re-query CCDS DB by CCDS ID:10456.1Re-query CCDS DB by GeneID:9143See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248121.7 ENSP00000248121.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248121.7Link to Ensembl Protein Viewer:ENSP00000248121.2Re-query CCDS DB by Nucleotide ID:ENST00000248121Re-query CCDS DB by Protein ID:ENSP00000248121
Original member Current member NCBI NM_004209.6 NP_004200.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004209.6Link to Protein Sequence:NP_004200.2Re-query CCDS DB by Nucleotide ID:NM_004209Re-query CCDS DB by Protein ID:NP_004200Link to BLAST:NP_004200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004200.2 229 O43761 229 100% 0 0

Chromosomal Locations for CCDS 10456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1990103 1990201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1991974 1992211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1992636 1992778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1992863 1993072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGAGGGCGCCTCCTTCGGCGCGGGCCGCGCAGGGGCCGCCCTGGACCCCGTGAGCTTTGCGCGGCGGC
CCCAGACCCTGCTCCGGGTCGCGTCCTGGGTGTTCTCCATCGCCGTCTTCGGGCCCATCGTCAACGAGGG
CTACGTGAACACCGACAGCGGCCCCGAGCTGCGCTGCGTGTTCAACGGGAACGCGGGCGCCTGCCGCTTC
GGCGTCGCGCTGGGCCTCGGAGCCTTCCTCGCCTGCGCCGCCTTCCTGCTGCTCGATGTGCGCTTCCAGC
AAATCAGCAGCGTCCGCGACCGCCGGCGCGCGGTGTTGCTGGACCTGGGCTTCTCAGGACTCTGGTCCTT
CCTGTGGTTCGTGGGCTTCTGCTTCCTCACCAATCAGTGGCAGCGCACGGCGCCAGGGCCGGCCACGACG
CAGGCGGGGGACGCGGCGCGGGCCGCCATCGCCTTCAGCTTCTTCTCCATCCTCAGCTGGGTGGCGCTCA
CCGTGAAGGCCCTGCAGCGGTTCCGCCTGGGCACCGACATGTCACTCTTCGCCACCGAACAGCTGAGCAC
CGGGGCGAGCCAGGCCTACCCCGGCTATCCGGTGGGCAGCGGCGTGGAGGGCACCGAGACCTACCAGAGC
CCGCCCTTCACCGAGACCCTGGACACCAGCCCCAAAGGGTACCAGGTGCCCGCCTACTAG

Translation (229 aa):
MEGASFGAGRAGAALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNTDSGPELRCVFNGNAGACRF
GVALGLGAFLACAAFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWFVGFCFLTNQWQRTAPGPATT
QAGDAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSLFATEQLSTGASQAYPGYPVGSGVEGTETYQS
PPFTETLDTSPKGYQVPAY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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