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Report for CCDS10450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10450.1 Public Homo sapiens 16 RPL3L 24 110 108 CCDS HistoryNCBI Gene:6123Re-query CCDS DB by CCDS ID:10450.1Re-query CCDS DB by GeneID:6123See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10450.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268661.8 ENSP00000268661.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268661.8Link to Ensembl Protein Viewer:ENSP00000268661.7Re-query CCDS DB by Nucleotide ID:ENST00000268661Re-query CCDS DB by Protein ID:ENSP00000268661
Original member Current member NCBI NM_005061.3 NP_005052.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005061.3Link to Protein Sequence:NP_005052.1Re-query CCDS DB by Nucleotide ID:NM_005061Re-query CCDS DB by Protein ID:NP_005052Link to BLAST:NP_005052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005052.1 407 Q92901 407 100% 0 0

Chromosomal Locations for CCDS 10450.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1944837 1944893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1945499 1945618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1945835 1945930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1946625 1946726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1946938 1947098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1947194 1947380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1950844 1950979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1952874 1953042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1953956 1954148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1954629 1954631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGTCCCACCGGAAGTTTTCCGCCCCTCGGCACGGACACCTGGGCTTCCTGCCCCATAAGAGGAGCCACC
GGCACCGGGGCAAGGTGAAGACGTGGCCGCGGGATGACCCCAGCCAGCCCGTGCACCTCACGGCCTTCCT
GGGCTACAAGGCGGGCATGACCCACACCCTGCGGGAGGTGCACCGGCCGGGGCTCAAAATTTCCAAACGG
GAGGAGGTGGAGGCGGTGACAATTGTAGAAACGCCGCCCCTAGTGGTGGTGGGCGTGGTGGGCTACGTGG
CCACCCCTCGAGGTCTCCGGAGCTTCAAGACCATCTTTGCAGAACACCTCAGTGATGAGTGCCGGCGCCG
ATTCTACAAGGACTGGCACAAGAGCAAGAAGAAAGCCTTCACCAAGGCCTGCAAGAGGTGGCGGGACACA
GACGGGAAAAAGCAGCTACAGAAGGACTTCGCCGCCATGAAGAAGTACTGCAAGGTCATTCGGGTCATTG
TCCACACTCAGATGAAACTGCTGCCCTTCCGGCAGAAGAAGGCCCACATCATGGAGATCCAGCTGAACGG
TGGCACGGTGGCCGAGAAGGTGGCCTGGGCCCAGGCCCGGCTGGAGAAGCAGGTGCCCGTGCACAGCGTG
TTCAGCCAGAGTGAGGTCATTGATGTCATTGCTGTCACCAAGGGTCGAGGCGTCAAAGGGGTCACAAGCC
GCTGGCATACCAAGAAGCTGCCGCGGAAGACCCATAAGGGCCTGCGCAAGGTGGCCTGCATTGGCGCCTG
GCACCCCGCCCGCGTGGGCTGCTCCATTGCTCGGGCCGGGCAGAAGGGCTATCACCACCGCACGGAGCTC
AACAAGAAGATCTTCCGCATCGGCAGGGGCCCGCACATGGAGGACGGGAAGCTGGTGAAGAACAATGCAT
CCACCAGCTACGACGTGACTGCCAAGTCCATCACACCGCTGGGTGGCTTCCCCCACTACGGGGAAGTGAA
CAACGACTTCGTCATGCTGAAGGGTTGTATTGCTGGTACCAAGAAGCGGGTCATTACGCTGAGAAAGTCC
CTCCTGGTGCATCACAGTCGCCAAGCCGTGGAGAATATTGAGCTCAAGTTCATTGACACCACCTCCAAGT
TCGGCCATGGCCGCTTCCAGACAGCCCAAGAGAAGAGGGCCTTCATGGGCCCCCAAAAGAAGCATCTGGA
GAAGGAAACGCCGGAGACCTCGGGAGACTTGTAG

Translation (407 aa):
MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKR
EEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDT
DGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSV
FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTEL
NKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKS
LLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKETPETSGDL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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