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Report for CCDS10345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10345.1 Public Homo sapiens 15 ISG20 24 110 108 CCDS HistoryNCBI Gene:3669Re-query CCDS DB by CCDS ID:10345.1Re-query CCDS DB by GeneID:3669See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10345.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306072.10 ENSP00000306565.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306072.10Link to Ensembl Protein Viewer:ENSP00000306565.5Re-query CCDS DB by Nucleotide ID:ENST00000306072Re-query CCDS DB by Protein ID:ENSP00000306565
Original member Current member EBI ENST00000379224.10 ENSP00000368526.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379224.10Link to Ensembl Protein Viewer:ENSP00000368526.6Re-query CCDS DB by Nucleotide ID:ENST00000379224Re-query CCDS DB by Protein ID:ENSP00000368526
Original member Current member EBI ENST00000560741.5 ENSP00000453638.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000560741.5Link to Ensembl Protein Viewer:ENSP00000453638.1Re-query CCDS DB by Nucleotide ID:ENST00000560741Re-query CCDS DB by Protein ID:ENSP00000453638
Original member Current member NCBI NM_001303233.2 NP_001290162.1 Accepted alive Link to Nucleotide Sequence:NM_001303233.2Link to Protein Sequence:NP_001290162.1Re-query CCDS DB by Nucleotide ID:NM_001303233Re-query CCDS DB by Protein ID:NP_001290162Link to BLAST:NP_001290162.1
Original member Current member NCBI NM_001303234.2 NP_001290163.1 Accepted alive Link to Nucleotide Sequence:NM_001303234.2Link to Protein Sequence:NP_001290163.1Re-query CCDS DB by Nucleotide ID:NM_001303234Re-query CCDS DB by Protein ID:NP_001290163Link to BLAST:NP_001290163.1
Original member Current member NCBI NM_002201.6 NP_002192.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002201.6Link to Protein Sequence:NP_002192.2Re-query CCDS DB by Nucleotide ID:NM_002201Re-query CCDS DB by Protein ID:NP_002192Link to BLAST:NP_002192.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290162.1 181 Q96AZ6-1 181 100% 0 0
NP_001290163.1 181 Q96AZ6-1 181 100% 0 0
NP_002192.2 181 Q96AZ6-1 181 100% 0 0

Chromosomal Locations for CCDS 10345.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 88639367 88639594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88652110 88652310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88655415 88655531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGGCTGGGAGCCGTGAGGTGGTGGCCATGGACTGCGAGATGGTGGGGCTGGGGCCCCACCGGGAGAGTG
GCCTGGCTCGTTGCAGCCTCGTGAACGTCCACGGTGCTGTGCTGTACGACAAGTTCATCCGGCCTGAGGG
AGAGATCACCGATTACAGAACCCGGGTCAGCGGGGTCACCCCTCAGCACATGGTGGGGGCCACACCATTT
GCCGTGGCCAGGCTAGAGATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGACCTGAAGCACG
ACTTCCAGGCACTGAAAGAGGACATGAGCGGCTACACAATCTACGACACGTCCACTGACAGGCTGTTGTG
GCGTGAGGCCAAGCTGGACCACTGCAGGCGTGTCTCCCTGCGGGTGCTGAGTGAGCGCCTCCTACACAAG
AGCATCCAGAACAGCCTGCTTGGACACAGCTCGGTGGAAGATGCGAGGGCAACGATGGAGCTCTATCAAA
TCTCCCAGAGAATCCGAGCCCGCCGAGGGCTGCCCCGCCTGGCTGTGTCAGACTGA

Translation (181 aa):
MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPF
AVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHK
SIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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