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Report for CCDS1030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1030.1 Public Homo sapiens 1 IVL 24 110 108 CCDS HistoryNCBI Gene:3713Re-query CCDS DB by CCDS ID:1030.1Re-query CCDS DB by GeneID:3713See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368764.4 ENSP00000357753.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368764.4Link to Ensembl Protein Viewer:ENSP00000357753.3Re-query CCDS DB by Nucleotide ID:ENST00000368764Re-query CCDS DB by Protein ID:ENSP00000357753
Original member Current member NCBI NM_005547.4 NP_005538.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005547.4Link to Protein Sequence:NP_005538.2Re-query CCDS DB by Nucleotide ID:NM_005547Re-query CCDS DB by Protein ID:NP_005538Link to BLAST:NP_005538.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005538.2 585 P07476 585 100% 0 0

Chromosomal Locations for CCDS 1030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152909798 152911555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGTCCCAGCAACACACACTGCCAGTGACCCTCTCCCCTGCCCTCAGTCAGGAGCTCCTCAAGACTGTTC
CTCCTCCAGTCAATACCCATCAGGAGCAAATGAAACAGCCAACTCCACTGCCTCCCCCATGCCAGAAGGT
GCCTGTCGAGCTCCCAGTGGAGGTCCCATCAAAGCAAGAGGAAAAGCACATGACTGCTGTAAAGGGACTG
CCTGAGCAAGAATGTGAGCAACAGCAGAAGGAGCCACAGGAGCAGGAGCTGCAGCAACAGCACTGGGAAC
AGCATGAGGAATATCAGAAAGCAGAAAACCCAGAGCAGCAGCTTAAGCAGGAGAAAACACAAAGGGATCA
GCAGCTAAACAAACAGCTGGAAGAAGAGAAGAAGCTCTTAGACCAGCAACTGGATCAAGAGCTAGTCAAG
AGAGATGAGCAACTGGGAATGAAGAAAGAGCAACTGTTGGAGCTCCCAGAGCAGCAGGAGGGGCACCTGA
AGCACCTAGAGCAGCAGGAGGGACAGCTGAAGCACCCGGAGCAGCAGGAGGGGCAGCTGGAGCTCCCAGA
GCAGCAGGAGGGGCAGCTGGAGCTCCCAGAGCAGCAGGAGGGGCAGCTGGAGCTCCCAGAGCAGCAGGAG
GGGCAGCTGGAGCTCCCAGAGCAGCAGGAGGGGCAGCTGGAGCTCCCAGAGCAGCAGGAGGGGCAGCTGG
AGCTCCCACAGCAGCAGGAGGGGCAGCTGGAGCTCTCTGAGCAGCAGGAGGGGCAGCTGGAGCTCTCTGA
GCAGCAGGAGGGACAGCTGAAGCACCTGGAGCACCAGGAGGGGCAGCTGGAGGTCCCAGAGGAGCAGATG
GGGCAGCTGAAGTACCTGGAACAGCAGGAGGGGCAGCTGAAGCACCTGGATCAGCAGGAGAAGCAGCCAG
AGCTCCCAGAGCAGCAGATGGGGCAGCTGAAGCACCTGGAGCAGCAGGAGGGGCAGCCTAAGCATCTGGA
GCAGCAGGAGGGGCAACTGGAGCAGCTGGAGGAGCAGGAGGGGCAGCTGAAGCACCTGGAGCAGCAGGAG
GGGCAGCTGGAGCACCTGGAGCACCAGGAAGGGCAGCTGGGGCTCCCAGAGCAGCAGGTGCTGCAGCTGA
AGCAGCTAGAGAAGCAGCAGGGGCAGCCAAAGCACCTGGAGGAGGAGGAGGGGCAGCTGAAGCACCTGGT
GCAGCAGGAGGGGCAGCTGAAGCATCTGGTGCAGCAGGAGGGGCAGCTGGAGCAGCAGGAGAGGCAGGTG
GAGCACCTGGAGCAGCAGGTGGGGCAGCTGAAGCACCTAGAGGAGCAGGAGGGACAACTGAAGCATCTGG
AGCAGCAGCAGGGGCAGTTGGAGGTCCCAGAGCAGCAGGTGGGGCAGCCAAAGAACCTGGAGCAGGAGGA
GAAGCAACTGGAGCTCCCAGAGCAGCAAGAGGGCCAGGTGAAGCACCTGGAGAAGCAGGAGGCACAGCTG
GAGCTCCCAGAGCAGCAGGTAGGACAGCCAAAGCACCTGGAACAGCAGGAAAAGCACCTAGAGCACCCAG
AGCAGCAGGACGGACAACTAAAACATCTGGAGCAGCAGGAGGGGCAGCTGAAGGACCTGGAGCAGCAGAA
GGGGCAGCTGGAGCAGCCTGTGTTTGCCCCAGCTCCAGGCCAGGTCCAAGACATTCAACCAGCCCTGCCC
ACAAAGGGAGAAGTATTGCTTCCTGTAGAGCACCAGCAGCAGAAGCAGGAGGTGCAGTGGCCACCCAAAC
ATAAATAA

Translation (585 aa):
MSQQHTLPVTLSPALSQELLKTVPPPVNTHQEQMKQPTPLPPPCQKVPVELPVEVPSKQEEKHMTAVKGL
PEQECEQQQKEPQEQELQQQHWEQHEEYQKAENPEQQLKQEKTQRDQQLNKQLEEEKKLLDQQLDQELVK
RDEQLGMKKEQLLELPEQQEGHLKHLEQQEGQLKHPEQQEGQLELPEQQEGQLELPEQQEGQLELPEQQE
GQLELPEQQEGQLELPEQQEGQLELPQQQEGQLELSEQQEGQLELSEQQEGQLKHLEHQEGQLEVPEEQM
GQLKYLEQQEGQLKHLDQQEKQPELPEQQMGQLKHLEQQEGQPKHLEQQEGQLEQLEEQEGQLKHLEQQE
GQLEHLEHQEGQLGLPEQQVLQLKQLEKQQGQPKHLEEEEGQLKHLVQQEGQLKHLVQQEGQLEQQERQV
EHLEQQVGQLKHLEEQEGQLKHLEQQQGQLEVPEQQVGQPKNLEQEEKQLELPEQQEGQVKHLEKQEAQL
ELPEQQVGQPKHLEQQEKHLEHPEQQDGQLKHLEQQEGQLKDLEQQKGQLEQPVFAPAPGQVQDIQPALP
TKGEVLLPVEHQQQKQEVQWPPKHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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