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Report for CCDS1029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1029.1 Public Homo sapiens 1 SMCP 24 110 108 CCDS HistoryNCBI Gene:4184Re-query CCDS DB by CCDS ID:1029.1Re-query CCDS DB by GeneID:4184See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368765.4 ENSP00000357754.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368765.4Link to Ensembl Protein Viewer:ENSP00000357754.3Re-query CCDS DB by Nucleotide ID:ENST00000368765Re-query CCDS DB by Protein ID:ENSP00000357754
Original member Current member NCBI NM_030663.3 NP_109588.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030663.3Link to Protein Sequence:NP_109588.2Re-query CCDS DB by Nucleotide ID:NM_030663Re-query CCDS DB by Protein ID:NP_109588Link to BLAST:NP_109588.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109588.2 116 P49901 116 100% 0 0

Chromosomal Locations for CCDS 1029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152884423 152884773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGTGTGACCAGACAAAACACAGTAAATGCTGCCCAGCAAAAGGCAATCAATGCTGCCCACCACAGCAGA
ACCAGTGCTGCCAGTCAAAAGGCAATCAATGCTGCCCACCAAAACAGAACCAGTGCTGCCAGCCAAAAGG
CAGTCAATGCTGCCCACCAAAACACAATCACTGCTGCCAGCCAAAACCCCCATGCTGCATTCAGGCCAGG
TGCTGTGGTTTGGAGACCAAGCCTGAAGTCTCACCCCTTAACATGGAGTCTGAGCCCAACTCACCGCAAA
CTCAGGACAAGGGCTGTCAAACCCAGCAGCAGCCCCATAGCCCACAAAATGAGTCCAGGCCAAGCAAATG
A

Translation (116 aa):
MCDQTKHSKCCPAKGNQCCPPQQNQCCQSKGNQCCPPKQNQCCQPKGSQCCPPKHNHCCQPKPPCCIQAR
CCGLETKPEVSPLNMESEPNSPQTQDKGCQTQQQPHSPQNESRPSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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