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Report for CCDS10279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10279.1 Public Homo sapiens 15 SIN3A 24 110 108 CCDS HistoryNCBI Gene:25942Re-query CCDS DB by CCDS ID:10279.1Re-query CCDS DB by GeneID:25942See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360439.8 ENSP00000353622.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360439.8Link to Ensembl Protein Viewer:ENSP00000353622.4Re-query CCDS DB by Nucleotide ID:ENST00000360439Re-query CCDS DB by Protein ID:ENSP00000353622
Original member Current member EBI ENST00000394947.8 ENSP00000378402.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394947.8Link to Ensembl Protein Viewer:ENSP00000378402.3Re-query CCDS DB by Nucleotide ID:ENST00000394947Re-query CCDS DB by Protein ID:ENSP00000378402
Original member Current member EBI ENST00000394949.8 ENSP00000378403.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394949.8Link to Ensembl Protein Viewer:ENSP00000378403.4Re-query CCDS DB by Nucleotide ID:ENST00000394949Re-query CCDS DB by Protein ID:ENSP00000378403
Original member Current member EBI ENST00000565264.2 ENSP00000454296.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565264.2Link to Ensembl Protein Viewer:ENSP00000454296.2Re-query CCDS DB by Nucleotide ID:ENST00000565264Re-query CCDS DB by Protein ID:ENSP00000454296
Original member Current member EBI ENST00000564778.6 ENSP00000455204.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564778.6Link to Ensembl Protein Viewer:ENSP00000455204.2Re-query CCDS DB by Nucleotide ID:ENST00000564778Re-query CCDS DB by Protein ID:ENSP00000455204
Original member Current member EBI ENST00000704312.1 ENSP00000515834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704312.1Link to Ensembl Protein Viewer:ENSP00000515834.1Re-query CCDS DB by Nucleotide ID:ENST00000704312Re-query CCDS DB by Protein ID:ENSP00000515834
Original member Current member NCBI NM_001145357.2 NP_001138829.1 Accepted alive Link to Nucleotide Sequence:NM_001145357.2Link to Protein Sequence:NP_001138829.1Re-query CCDS DB by Nucleotide ID:NM_001145357Re-query CCDS DB by Protein ID:NP_001138829Link to BLAST:NP_001138829.1
Original member Current member NCBI NM_001145358.2 NP_001138830.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145358.2Link to Protein Sequence:NP_001138830.1Re-query CCDS DB by Nucleotide ID:NM_001145358Re-query CCDS DB by Protein ID:NP_001138830Link to BLAST:NP_001138830.1
Original member Current member NCBI NM_015477.3 NP_056292.1 Accepted alive Link to Nucleotide Sequence:NM_015477.3Link to Protein Sequence:NP_056292.1Re-query CCDS DB by Nucleotide ID:NM_015477Re-query CCDS DB by Protein ID:NP_056292Link to BLAST:NP_056292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138829.1 1273 Q96ST3 1273 100% 0 0
NP_001138830.1 1273 Q96ST3 1273 100% 0 0
NP_056292.1 1273 Q96ST3 1273 100% 0 0

Chromosomal Locations for CCDS 10279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75371979 75372209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75375665 75375872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75380629 75380723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75381613 75381705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75384264 75384437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75389652 75389821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75392242 75392815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75394680 75394863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75396258 75396496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75400040 75400156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75400730 75400940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75401852 75401970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75407055 75407144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75409836 75409991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75410134 75410286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75411492 75411743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75412763 75413045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75414205 75414311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75422647 75422823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75430187 75430375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3822 nt):
ATGAAGCGGCGTTTGGATGACCAGGAGTCACCGGTGTATGCAGCCCAGCAGCGTCGGATCCCTGGCAGCA
CAGAGGCTTTTCCTCACCAGCACCGGGTGCTTGCCCCTGCCCCTCCTGTGTATGAAGCAGTGTCTGAGAC
CATGCAGTCAGCTACGGGAATTCAGTACTCTGTAACACCCAGCTACCAGGTTTCAGCCATGCCACAGAGC
TCCGGCAGTCATGGGCCCGCTATAGCAGCAGTTCATAGCAGCCATCATCACCCAACAGCGGTGCAGCCCC
ACGGAGGCCAGGTGGTCCAGAGTCATGCTCATCCAGCCCCACCAGTTGCACCAGTGCAGGGACAGCAGCA
ATTTCAGAGGCTGAAGGTGGAGGATGCGCTATCTTATCTTGACCAGGTGAAGCTGCAGTTTGGTAGTCAG
CCTCAGGTCTACAATGATTTCCTTGACATCATGAAGGAATTTAAATCTCAGAGCATCGACACCCCAGGAG
TGATTAGTCGTGTGTCCCAGCTATTCAAAGGCCACCCCGATCTGATAATGGGATTCAACACCTTCTTGCC
CCCTGGCTACAAAATTGAGGTGCAAACCAATGACATGGTGAATGTGACAACTCCTGGCCAGGTTCATCAG
ATTCCCACCCATGGCATCCAGCCACAGCCTCAACCACCACCCCAACATCCTTCCCAGCCTTCAGCCCAGT
CAGCCCCAGCTCCTGCCCAGCCAGCTCCTCAGCCCCCACCTGCCAAAGTCAGCAAGCCCTCCCAACTGCA
AGCACATACTCCGGCCAGTCAGCAGACTCCCCCACTTCCACCGTATGCATCCCCACGTTCTCCGCCGGTC
CAGCCTCACACACCAGTGACAATCTCGTTGGGAACGGCCCCATCCTTGCAGAACAATCAACCTGTGGAGT
TTAATCATGCCATCAACTATGTTAATAAGATCAAGAACAGATTTCAGGGCCAACCAGACATCTACAAAGC
ATTCCTGGAGATTTTGCACACATATCAGAAAGAGCAGAGAAATGCCAAGGAAGCTGGAGGAAACTACACT
CCAGCATTGACAGAGCAGGAGGTGTATGCCCAGGTTGCTCGTCTCTTTAAAAACCAGGAAGATTTGTTGT
CAGAGTTTGGACAATTCCTACCAGATGCCAACAGCTCCGTGCTTTTAAGCAAAACAACTGCTGAGAAGGT
TGATTCTGTGAGAAATGATCATGGAGGCACTGTCAAGAAGCCCCAACTGAACAACAAGCCGCAGAGGCCC
AGCCAGAATGGCTGCCAGATCCGCAGACATCCTACAGGAACCACCCCTCCAGTTAAGAAGAAACCCAAAC
TGCTCAATCTGAAGGATTCTTCTATGGCAGATGCCAGCAAACATGGTGGTGGAACAGAATCGTTATTTTT
TGATAAGGTCCGAAAGGCTCTTCGGAGTGCAGAAGCCTACGAAAATTTCCTACGCTGTCTTGTTATTTTT
AACCAGGAGGTGATCTCTCGTGCTGAGCTTGTGCAACTAGTCTCTCCTTTCCTGGGGAAATTCCCTGAGT
TGTTTAATTGGTTTAAAAACTTTCTGGGCTATAAGGAGTCTGTACATCTGGAAACTTATCCAAAGGAGCG
AGCCACAGAGGGCATTGCTATGGAGATAGATTATGCTTCTTGTAAACGATTGGGCTCCAGCTATCGAGCC
TTACCAAAGAGTTACCAGCAGCCCAAGTGTACAGGACGGACTCCTCTCTGTAAAGAGGTTTTAAATGATA
CCTGGGTTTCCTTCCCTTCGTGGTCTGAGGACTCTACCTTTGTGAGTTCCAAGAAGACTCAATATGAAGA
ACATATTTATCGTTGTGAAGATGAACGCTTTGAGCTTGATGTAGTTTTAGAGACCAATCTGGCAACAATC
CGGGTTCTGGAAGCAATACAGAAGAAGCTTTCCCGCTTGTCTGCTGAAGAACAAGCCAAATTTCGCTTGG
ACAACACCCTTGGGGGCACATCAGAAGTCATCCATAGAAAAGCACTCCAGAGGATATATGCTGATAAAGC
AGCTGACATCATTGATGGTCTGAGAAAGAATCCCTCCATTGCTGTTCCAATTGTCCTTAAAAGGTTGAAG
ATGAAAGAGGAAGAATGGCGAGAAGCTCAGAGAGGCTTTAACAAAGTATGGCGAGAACAAAATGAGAAAT
ACTACTTGAAGTCTCTGGACCACCAGGGGATCAACTTTAAACAGAATGACACCAAGGTCCTGAGGTCTAA
GAGCTTACTCAATGAGATTGAGAGTATCTATGATGAGAGGCAAGAGCAGGCTACGGAGGAGAATGCTGGT
GTACCTGTTGGCCCACACCTCTCACTTGCGTATGAAGACAAACAAATACTGGAAGATGCTGCTGCTCTGA
TTATCCACCATGTGAAGAGGCAGACAGGCATTCAGAAGGAGGACAAATATAAGATAAAACAAATCATGCA
TCATTTTATTCCAGATTTGCTCTTTGCCCAAAGAGGTGATCTCTCAGATGTGGAGGAAGAGGAAGAAGAA
GAGATGGATGTAGATGAAGCCACAGGGGCAGTTAAGAAGCACAATGGTGTTGGGGGCAGTCCCCCTAAGT
CCAAGTTACTGTTTAGTAACACAGCAGCTCAAAAATTAAGAGGAATGGATGAAGTATACAACCTCTTCTA
TGTCAACAACAACTGGTATATTTTTATGCGACTGCACCAGATTCTCTGCCTGAGGCTGCTACGGATTTGT
TCCCAAGCCGAACGGCAAATTGAAGAAGAAAACCGAGAGAGAGAATGGGAACGGGAAGTGCTGGGCATAA
AGCGAGACAAGAGTGACAGCCCTGCCATTCAGCTACGTCTCAAAGAACCTATGGATGTTGATGTAGAAGA
TTATTACCCAGCTTTCCTGGACATGGTGCGGAGCCTGCTGGATGGCAACATAGACTCATCACAGTATGAA
GATTCACTGAGAGAGATGTTCACCATTCATGCCTACATTGCCTTTACCATGGACAAACTGATCCAGAGCA
TTGTCAGACAGCTGCAGCATATCGTGAGTGATGAGATCTGTGTGCAGGTGACTGACCTTTACCTGGCAGA
AAATAATAATGGGGCCACCGGAGGCCAGCTGAACACACAGAACTCAAGGAGCCTCCTGGAGTCAACGTAT
CAGCGGAAAGCTGAGCAGCTAATGTCAGATGAGAATTGCTTTAAGCTTATGTTTATTCAGAGCCAAGGCC
AGGTCCAGCTGACTATTGAGCTTCTGGACACAGAAGAGGAGAATTCGGATGACCCTGTGGAAGCAGAGCG
CTGGTCAGACTACGTGGAGCGATACATGAATTCAGATACTACCTCGCCTGAGCTTCGTGAACATCTAGCA
CAGAAACCAGTATTTCTCCCCAGGAATCTACGGCGGATCCGGAAGTGTCAACGTGGTCGAGAGCAGCAGG
AAAAGGAAGGGAAGGAAGGAAACAGCAAGAAGACCATGGAGAATGTGGATAGTCTGGATAAGCTGGAGTG
TAGATTCAAGCTGAATTCCTACAAGATGGTGTATGTGATCAAATCAGAGGACTATATGTATCGGAGGACC
GCCCTGCTCCGGGCTCATCAGTCCCATGAGCGTGTAAGCAAGCGTCTACATCAGAGATTCCAGGCCTGGG
TAGATAAATGGACCAAGGAGCATGTGCCCCGTGAAATGGCAGCAGAGACCAGCAAGTGGCTCATGGGTGA
GGGGCTGGAGGGCCTGGTGCCCTGTACCACCACCTGTGATACAGAGACCCTGCATTTTGTGAGCATTAAC
AAGTATCGTGTCAAATACGGCACAGTATTCAAAGCCCCTTAA

Translation (1273 aa):
MKRRLDDQESPVYAAQQRRIPGSTEAFPHQHRVLAPAPPVYEAVSETMQSATGIQYSVTPSYQVSAMPQS
SGSHGPAIAAVHSSHHHPTAVQPHGGQVVQSHAHPAPPVAPVQGQQQFQRLKVEDALSYLDQVKLQFGSQ
PQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQ
IPTHGIQPQPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPV
QPHTPVTISLGTAPSLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYT
PALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKVDSVRNDHGGTVKKPQLNNKPQRP
SQNGCQIRRHPTGTTPPVKKKPKLLNLKDSSMADASKHGGGTESLFFDKVRKALRSAEAYENFLRCLVIF
NQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKESVHLETYPKERATEGIAMEIDYASCKRLGSSYRA
LPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATI
RVLEAIQKKLSRLSAEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSIAVPIVLKRLK
MKEEEWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQATEENAG
VPVGPHLSLAYEDKQILEDAAALIIHHVKRQTGIQKEDKYKIKQIMHHFIPDLLFAQRGDLSDVEEEEEE
EMDVDEATGAVKKHNGVGGSPPKSKLLFSNTAAQKLRGMDEVYNLFYVNNNWYIFMRLHQILCLRLLRIC
SQAERQIEEENREREWEREVLGIKRDKSDSPAIQLRLKEPMDVDVEDYYPAFLDMVRSLLDGNIDSSQYE
DSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTDLYLAENNNGATGGQLNTQNSRSLLESTY
QRKAEQLMSDENCFKLMFIQSQGQVQLTIELLDTEEENSDDPVEAERWSDYVERYMNSDTTSPELREHLA
QKPVFLPRNLRRIRKCQRGREQQEKEGKEGNSKKTMENVDSLDKLECRFKLNSYKMVYVIKSEDYMYRRT
ALLRAHQSHERVSKRLHQRFQAWVDKWTKEHVPREMAAETSKWLMGEGLEGLVPCTTTCDTETLHFVSIN
KYRVKYGTVFKAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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