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Report for CCDS10253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10253.1 Public Homo sapiens 15 LOXL1 24 110 108 CCDS HistoryNCBI Gene:4016Re-query CCDS DB by CCDS ID:10253.1Re-query CCDS DB by GeneID:4016See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261921.8 ENSP00000261921.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261921.8Link to Ensembl Protein Viewer:ENSP00000261921.7Re-query CCDS DB by Nucleotide ID:ENST00000261921Re-query CCDS DB by Protein ID:ENSP00000261921
Original member Current member NCBI NM_005576.4 NP_005567.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005576.4Link to Protein Sequence:NP_005567.2Re-query CCDS DB by Nucleotide ID:NM_005576Re-query CCDS DB by Protein ID:NP_005567Link to BLAST:NP_005567.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005567.2 574 Q08397 574 100% 0 0

Chromosomal Locations for CCDS 10253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 73926784 73927885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73942854 73942962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73946417 73946554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73947067 73947223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73947807 73947902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73949459 73949574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73951831 73951837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGCTCTGGCCCGAGGCAGCCGGCAGCTGGGGGCCCTGGTGTGGGGCGCCTGCCTGTGCGTGCTGGTGC
ACGGGCAGCAGGCGCAGCCCGGGCAGGGCTCGGACCCCGCCCGCTGGCGGCAGCTGATCCAGTGGGAGAA
CAACGGGCAGGTGTACAGCTTGCTCAACTCGGGCTCAGAGTACGTGCCGGCCGGACCTCAGCGCTCCGAG
AGTAGCTCCCGGGTGCTGCTGGCCGGCGCGCCCCAGGCCCAGCAGCGGCGCAGCCACGGGAGCCCCCGGC
GTCGGCAGGCGCCGTCCCTGCCCCTGCCGGGGCGCGTGGGCTCGGACACCGTGCGCGGCCAGGCGCGGCA
CCCATTCGGCTTTGGCCAGGTGCCCGACAACTGGCGCGAGGTGGCCGTCGGGGACAGCACGGGCATGGCC
CGGGCCCGCACCTCCGTCTCCCAGCAACGGCACGGGGGCTCCGCCTCCTCGGTCTCGGCTTCGGCCTTCG
CCAGCACCTACCGCCAGCAGCCCTCCTACCCGCAGCAGTTCCCCTACCCGCAGGCGCCCTTCGTCAGCCA
GTACGAGAACTACGACCCCGCGTCGCGGACCTACGACCAGGGTTTCGTGTACTACCGGCCCGCGGGCGGC
GGCGTGGGCGCGGGGGCGGCGGCCGTGGCCTCGGCGGGGGTCATCTACCCCTACCAGCCCCGGGCGCGCT
ACGAGGAGTACGGCGGCGGCGAAGAGCTGCCCGAGTACCCGCCTCAGGGCTTCTACCCGGCCCCCGAGAG
GCCCTACGTGCCGCCGCCGCCGCCGCCCCCCGACGGCCTGGACCGCCGCTACTCGCACAGTCTGTACAGC
GAGGGCACCCCCGGCTTCGAGCAGGCCTACCCTGACCCCGGTCCCGAGGCGGCGCAGGCCCATGGCGGAG
ACCCACGCCTGGGCTGGTACCCGCCCTACGCCAACCCGCCGCCCGAGGCGTACGGGCCGCCGCGCGCGCT
GGAGCCGCCCTACCTGCCGGTGCGCAGCTCCGACACGCCCCCGCCGGGTGGGGAGCGGAACGGCGCGCAG
CAGGGCCGCCTCAGCGTGGGCAGCGTGTACCGGCCCAACCAGAACGGCCGCGGTCTCCCTGACTTGGTCC
CAGACCCCAACTATGTGCAAGCATCCACTTATGTGCAGAGAGCCCACCTGTACTCCCTGCGCTGTGCTGC
GGAGGAGAAGTGTCTGGCCAGCACAGCCTATGCCCCTGAGGCCACCGACTACGATGTGCGGGTGCTACTG
CGCTTCCCCCAGCGCGTGAAGAACCAGGGCACAGCAGACTTCCTCCCCAACCGGCCACGGCACACCTGGG
AGTGGCACAGCTGCCACCAGCATTACCACAGCATGGACGAGTTCAGCCACTACGACCTACTGGATGCAGC
CACAGGCAAGAAGGTGGCCGAGGGCCACAAGGCCAGTTTCTGCCTGGAGGACAGCACCTGTGACTTCGGC
AACCTCAAGCGCTATGCATGCACCTCTCATACCCAGGGCCTGAGCCCAGGCTGCTATGACACCTACAATG
CGGACATCGACTGCCAGTGGATCGACATAACCGACGTGCAGCCTGGGAACTACATCCTCAAGGTGCACGT
GAACCCAAAGTATATTGTTTTGGAGTCTGACTTCACCAACAACGTGGTGAGATGCAACATTCACTACACA
GGTCGCTACGTTTCTGCAACAAACTGCAAAATTGTCCAATCCTGA

Translation (574 aa):
MALARGSRQLGALVWGACLCVLVHGQQAQPGQGSDPARWRQLIQWENNGQVYSLLNSGSEYVPAGPQRSE
SSSRVLLAGAPQAQQRRSHGSPRRRQAPSLPLPGRVGSDTVRGQARHPFGFGQVPDNWREVAVGDSTGMA
RARTSVSQQRHGGSASSVSASAFASTYRQQPSYPQQFPYPQAPFVSQYENYDPASRTYDQGFVYYRPAGG
GVGAGAAAVASAGVIYPYQPRARYEEYGGGEELPEYPPQGFYPAPERPYVPPPPPPPDGLDRRYSHSLYS
EGTPGFEQAYPDPGPEAAQAHGGDPRLGWYPPYANPPPEAYGPPRALEPPYLPVRSSDTPPPGGERNGAQ
QGRLSVGSVYRPNQNGRGLPDLVPDPNYVQASTYVQRAHLYSLRCAAEEKCLASTAYAPEATDYDVRVLL
RFPQRVKNQGTADFLPNRPRHTWEWHSCHQHYHSMDEFSHYDLLDAATGKKVAEGHKASFCLEDSTCDFG
NLKRYACTSHTQGLSPGCYDTYNADIDCQWIDITDVQPGNYILKVHVNPKYIVLESDFTNNVVRCNIHYT
GRYVSATNCKIVQS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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