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Report for CCDS10234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10234.1 Public Homo sapiens 15 RPLP1 24 110 108 CCDS HistoryNCBI Gene:6176Re-query CCDS DB by CCDS ID:10234.1Re-query CCDS DB by GeneID:6176See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 10234.1
This CCDS ID represents a variant of the RPLP1 gene that is based on a splice pattern found in several ESTs, including BM768334.1, BM508180.1, EL948616.1 and AJ713466.1.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10234.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357790.5 ENSP00000350437.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357790.5Link to Ensembl Protein Viewer:ENSP00000350437.5Re-query CCDS DB by Nucleotide ID:ENST00000357790Re-query CCDS DB by Protein ID:ENSP00000350437
Original member Current member NCBI NM_213725.2 NP_998890.1 Accepted alive Link to Nucleotide Sequence:NM_213725.2Link to Protein Sequence:NP_998890.1Re-query CCDS DB by Nucleotide ID:NM_213725Re-query CCDS DB by Protein ID:NP_998890Link to BLAST:NP_998890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998890.1 89 P05386-2 89 100% 0 0

Chromosomal Locations for CCDS 10234.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 69452949 69453020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69455170 69455287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 69455428 69455507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (270 nt):
ATGGCCTCTGTCTCCGAGCTCGCCTGCATCTACTCGGCCCTCATTCTGCACGACGATGAGGTGACAGTCA
CGGCCCTGGCCAACGTCAACATTGGGAGCCTCATCTGCAATGTAGGGGCCGGTGGACCTGCTCCAGCAGC
TGGTGCTGCACCAGCAGGAGGTCCTGCCCCCTCCACTGCTGCTGCTCCAGCTGAGGAGAAGAAAGTGGAA
GCAAAGAAAGAAGAATCCGAGGAGTCTGATGATGACATGGGCTTTGGTCTTTTTGACTAA

Translation (89 aa):
MASVSELACIYSALILHDDEVTVTALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVE
AKKEESEESDDDMGFGLFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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