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Report for CCDS1023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1023.1 Public Homo sapiens 1 LCE1F 24 110 108 CCDS HistoryNCBI Gene:353137Re-query CCDS DB by CCDS ID:1023.1Re-query CCDS DB by GeneID:353137See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334371.4 ENSP00000334187.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334371.4Link to Ensembl Protein Viewer:ENSP00000334187.2Re-query CCDS DB by Nucleotide ID:ENST00000334371Re-query CCDS DB by Protein ID:ENSP00000334187
Original member Current member NCBI NM_178354.3 NP_848131.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178354.3Link to Protein Sequence:NP_848131.1Re-query CCDS DB by Nucleotide ID:NM_178354Re-query CCDS DB by Protein ID:NP_848131Link to BLAST:NP_848131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848131.1 118 Q5T754 118 100% 0 0

Chromosomal Locations for CCDS 1023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152776372 152776728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGTCTTGCCAGCAGAGCCAGCAGCAGTGCCAGCCCCCTCCCAAGTGCACTCCCAAGTGCCCTCCCAAGT
GCCCCACACCGAAGTGCCCCCCAAAGTGTCCCCCTAAGTGCCCTCCTGTCTCTTCCTGCTGCAGCGTCAG
CTCCGGAGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCAGCTCT
GGGGGAGGCGGCTGTTGCCTGAGCCACCACAGACGGCGTAGGTCCCACCGCCACAGACCCCAGAGCTCTG
ACTGCTGCAGCCAGCCCTCAGCGGGCTCCAGCTGCTGCGGAGGGGGCAGTGGCCAGCACTCTGGAGGCTG
CTGCTGA

Translation (118 aa):
MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCCSSGGGGCCSS
GGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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