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Report for CCDS10217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10217.1 Public Homo sapiens 15 SNAPC5 24 110 108 CCDS HistoryNCBI Gene:10302Re-query CCDS DB by CCDS ID:10217.1Re-query CCDS DB by GeneID:10302See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10217.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316634.6 ENSP00000319597.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316634.6Link to Ensembl Protein Viewer:ENSP00000319597.5Re-query CCDS DB by Nucleotide ID:ENST00000316634Re-query CCDS DB by Protein ID:ENSP00000319597
Original member Current member EBI ENST00000395589.6 ENSP00000378954.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395589.6Link to Ensembl Protein Viewer:ENSP00000378954.2Re-query CCDS DB by Nucleotide ID:ENST00000395589Re-query CCDS DB by Protein ID:ENSP00000378954
Original member Current member EBI ENST00000562411.5 ENSP00000454421.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000562411.5Link to Ensembl Protein Viewer:ENSP00000454421.1Re-query CCDS DB by Nucleotide ID:ENST00000562411Re-query CCDS DB by Protein ID:ENSP00000454421
Original member Current member EBI ENST00000563480.6 ENSP00000457892.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563480.6Link to Ensembl Protein Viewer:ENSP00000457892.1Re-query CCDS DB by Nucleotide ID:ENST00000563480Re-query CCDS DB by Protein ID:ENSP00000457892
Original member Current member NCBI NM_001329615.2 NP_001316544.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001329615.2Link to Protein Sequence:NP_001316544.1Re-query CCDS DB by Nucleotide ID:NM_001329615Re-query CCDS DB by Protein ID:NP_001316544Link to BLAST:NP_001316544.1
Original member Current member NCBI NM_006049.4 NP_006040.1 Accepted alive Link to Nucleotide Sequence:NM_006049.4Link to Protein Sequence:NP_006040.1Re-query CCDS DB by Nucleotide ID:NM_006049Re-query CCDS DB by Protein ID:NP_006040Link to BLAST:NP_006040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316544.1 98 O75971-1 98 100% 0 0
NP_006040.1 98 O75971-1 98 100% 0 0

Chromosomal Locations for CCDS 10217.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 66494436 66494552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66495330 66495419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 66497642 66497731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGCTGAGCCGGCTTCAGGAACTGCGCAAGGAGGAGGAGACGCTGCTGCGGTTGAAGGCAGCCCTGCACG
ACCAGCTGAACCGCCTCAAGGTTGAAGAATTAGCCCTCCAATCAATGATCAGTTCTAGAAGAGGGGATGA
GATGCTGTCTTCTCACACTGTACCTGAACAGTCACATGATATGTTGGTGCATGTAGACAATGAAGCATCA
ATCAACCAAACAACCCTGGAGCTGAGCACAAAGAGTCATGTGACGGAAGAGGAGGAGGAGGAAGAGGAAG
AAGAATCAGATTCCTAA

Translation (98 aa):
MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMISSRRGDEMLSSHTVPEQSHDMLVHVDNEAS
INQTTLELSTKSHVTEEEEEEEEEESDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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