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Report for CCDS10089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10089.1 Public Homo sapiens 15 LRRC57 24 110 108 CCDS HistoryNCBI Gene:255252Re-query CCDS DB by CCDS ID:10089.1Re-query CCDS DB by GeneID:255252See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323443.6 ENSP00000326817.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000323443.6Link to Ensembl Protein Viewer:ENSP00000326817.2Re-query CCDS DB by Nucleotide ID:ENST00000323443Re-query CCDS DB by Protein ID:ENSP00000326817
Original member Current member EBI ENST00000397130.8 ENSP00000380319.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397130.8Link to Ensembl Protein Viewer:ENSP00000380319.3Re-query CCDS DB by Nucleotide ID:ENST00000397130Re-query CCDS DB by Protein ID:ENSP00000380319
Original member Current member EBI ENST00000563454.5 ENSP00000455445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563454.5Link to Ensembl Protein Viewer:ENSP00000455445.1Re-query CCDS DB by Nucleotide ID:ENST00000563454Re-query CCDS DB by Protein ID:ENSP00000455445
Original member Current member NCBI NM_153260.3 NP_694992.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153260.3Link to Protein Sequence:NP_694992.2Re-query CCDS DB by Nucleotide ID:NM_153260Re-query CCDS DB by Protein ID:NP_694992Link to BLAST:NP_694992.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694992.2 239 Q8N9N7 239 100% 0 0

Chromosomal Locations for CCDS 10089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 42544083 42544124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42545077 42545262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42547261 42547529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42548106 42548244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42548351 42548434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGGAAACAGTGCGCTCCGCGCTCATGTGGAAACGGCGCAGAAAACTGGTGTCTTTCAGCTTAAGGACC
GAGGGCTGACCGAGTTCCCCGCAGACTTGCAGAAGCTGACGAGCAATCTCAGGACCATCGACTTGTCCAA
CAACAAGATCGAAAGCCTACCGCCTTTGCTGATAGGAAAGTTCACTCTGCTGAAGAGCCTCTCCCTGAAC
AACAACAAACTGACTGTTCTGCCTGATGAGATATGCAATCTGAAAAAACTAGAGACGCTAAGCCTAAACA
ACAATCACCTTAGAGAGCTGCCGTCTACCTTTGGGCAACTCTCTGCCCTCAAGACCCTGAGCCTCTCTGG
GAACCAACTGGGAGCATTACCTCCCCAACTTTGTAGCCTACGGCACCTGGATGTGATGGATCTCTCTAAG
AACCAGATTCGAAGTATACCTGACTCAGTGGGAGAGCTGCAAGTCATCGAACTCAACCTCAACCAGAATC
AGATATCTCAGATCTCAGTGAAGATATCTTGCTGTCCACGCCTTAAAATTCTTCGCCTGGAAGAGAATTG
TCTTGAGCTCAGCATGCTTCCCCAGAGCATCCTCAGTGATTCCCAGATCTGTCTGCTTGCTGTGGAAGGC
AATCTTTTTGAAATAAAGAAACTTCGAGAACTGGAAGGCTATGATAAGTACATGGAGAGGTTCACAGCCA
CCAAGAAGAAGTTTGCGTGA

Translation (239 aa):
MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGKFTLLKSLSLN
NNKLTVLPDEICNLKKLETLSLNNNHLRELPSTFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVMDLSK
NQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLKILRLEENCLELSMLPQSILSDSQICLLAVEG
NLFEIKKLRELEGYDKYMERFTATKKKFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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