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Report for CCDS10050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10050.1 Public Homo sapiens 15 FSIP1 24 110 108 CCDS HistoryNCBI Gene:161835Re-query CCDS DB by CCDS ID:10050.1Re-query CCDS DB by GeneID:161835See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350221.4 ENSP00000280236.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000350221.4Link to Ensembl Protein Viewer:ENSP00000280236.3Re-query CCDS DB by Nucleotide ID:ENST00000350221Re-query CCDS DB by Protein ID:ENSP00000280236
Original member Current member NCBI NM_001324338.2 NP_001311267.1 Accepted alive Link to Nucleotide Sequence:NM_001324338.2Link to Protein Sequence:NP_001311267.1Re-query CCDS DB by Nucleotide ID:NM_001324338Re-query CCDS DB by Protein ID:NP_001311267Link to BLAST:NP_001311267.1
Original member Current member NCBI NM_152597.5 NP_689810.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152597.5Link to Protein Sequence:NP_689810.3Re-query CCDS DB by Nucleotide ID:NM_152597Re-query CCDS DB by Protein ID:NP_689810Link to BLAST:NP_689810.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311267.1 581 Q8NA03 581 100% 0 0
NP_689810.3 581 Q8NA03 581 100% 0 0

Chromosomal Locations for CCDS 10050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39600880 39600926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39617735 39618245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39713444 39713581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39726589 39726747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39738091 39738201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39739665 39739789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39741805 39741900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39763821 39763914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39765592 39765746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39770427 39770610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39776399 39776524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGATATTATAAAGGGAAACCTAGATGGAATTTCAAAACCAGCTTCAAATTCAAGAATACGCCCTGGGA
GCAGAAGTTCAAATGCTTCTTTGGAGGTGCTCTCAACAGAACCAGGATCCTTCAAGGTCGATACTGCAAG
CAACTTGAACTCTGGTAAAGAGGACCACTCCGAAAGCAGTAATACAGAGAACAGAAGAACTAGTAATGAT
GATAAGCAGGAAAGCTGCTCTGAGAAAATAAAATTGGCTGAAGAGGGATCAGATGAAGATCTGGATTTGG
TTCAACATCAGATAATCTCTGAGTGTTCAGATGAACCCAAATTAAAAGAATTAGATTCTCAACTTCAAGA
TGCTATTCAGAAGATGAAAAAACTTGATAAAATATTGGCAAAGAAACAACGCAGAGAAAAAGAAATTAAG
AAGCAAGGTCTAGAAATGAGAATAAAGCTGTGGGAAGAAATTAAGTCTGCAAAATATAGTGAAGCTTGGC
AAAGTAAAGAGGAGATGGAAAATACAAAAAAATTTTTATCTTTGACTGCTGTTTCTGAAGAAACTGTTGG
TCCTTCTCATGAGGAGGAAGACACCTTTTCCTCAGTGTTTCATACTCAAATCCCTCCAGAAGAATATGAA
ATGCAGATGCAGAAACTCAATAAAGATTTTACCTGTGATGTGGAAAGAAATGAGTCATTGATCAAATCAG
GAAAGAAACCTTTCTCGAATACAGAAAAGATTGAGCTCAGGGGTAAACACAACCAGGATTTTATTAAGAG
AAACATTGAGTTGGCCAAGGAATCAAGAAACCCAGTGGTTATGGTTGACAGAGAGAAGAAAAGGCTGGTT
GAGCTTTTGAAGGACTTGGATGAGAAAGATTCCGGGCTCTCCAGTTCTGAGGGTGATCAGTCTGGCTGGG
TGGTCCCAGTAAAAGGATATGAACTTGCAGTCACCCAGCATCAGCAGCTTGCTGAAATTGATATAAAACT
CCAAGAACTCTCTGCAGCCTCCCCTACAATTTCCAGTTTTTCTCCAAGACTTGAAAATCGGAATAATCAG
AAACCTGACCGTGATGGTGAAAGAAATATGGAAGTAACTCCAGGAGAAAAGATACTTAGGAACACCAAAG
AGCAACGCGATCTGCATAATCGGCTGAGAGAGATTGATGAAAAGCTGAAAATGATGAAGGAAAATGTGTT
AGAGTCCACATCATGTCTCTCTGAAGAACAGTTAAAGTGTCTTCTGGATGAATGCATACTTAAACAAAAA
TCCATCATTAAACTTTCTTCAGAAAGAAAAAAGGAAGACATTGAGGACGTAACACCTGTGTTCCCCCAGC
TTTCCAGGTCCATCATCTCTAAATTGCTAAATGAATCAGAAACAAAGGTCCAGAAAACTGAGGTAGAAGA
TGCAGATATGCTTGAGAGTGAAGAATGTGAAGCTTCTAAAGGCTACTATCTCACTAAAGCCTTGACTGGA
CATAACATGTCAGAAGCTCTTGTCACTGAAGCAGAGAATATGAAATGCCTTCAATTTTCCAAGGACGTTA
TTATTAGTGACACAAAAGACTATTTTATGTCGAAGACTCTTGGCATTGGGAGACTGAAAAGGCCCTCCTT
CTTAGATGATCCACTGTATGGTATCAGTGTGAGCCTTTCATCAGAAGACCAACATCTGAAACTCAGTTCT
CCAGAGAATACAATAGCAGATGAGCAGGAGACTAAAGATGCAGCAGAAGAATGTAAAGAACCCTAA

Translation (581 aa):
MDIIKGNLDGISKPASNSRIRPGSRSSNASLEVLSTEPGSFKVDTASNLNSGKEDHSESSNTENRRTSND
DKQESCSEKIKLAEEGSDEDLDLVQHQIISECSDEPKLKELDSQLQDAIQKMKKLDKILAKKQRREKEIK
KQGLEMRIKLWEEIKSAKYSEAWQSKEEMENTKKFLSLTAVSEETVGPSHEEEDTFSSVFHTQIPPEEYE
MQMQKLNKDFTCDVERNESLIKSGKKPFSNTEKIELRGKHNQDFIKRNIELAKESRNPVVMVDREKKRLV
ELLKDLDEKDSGLSSSEGDQSGWVVPVKGYELAVTQHQQLAEIDIKLQELSAASPTISSFSPRLENRNNQ
KPDRDGERNMEVTPGEKILRNTKEQRDLHNRLREIDEKLKMMKENVLESTSCLSEEQLKCLLDECILKQK
SIIKLSSERKKEDIEDVTPVFPQLSRSIISKLLNESETKVQKTEVEDADMLESEECEASKGYYLTKALTG
HNMSEALVTEAENMKCLQFSKDVIISDTKDYFMSKTLGIGRLKRPSFLDDPLYGISVSLSSEDQHLKLSS
PENTIADEQETKDAAEECKEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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