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Report for CCDS8146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8146.1 Public Homo sapiens 11 CCS 24 110 108 CCDS HistoryNCBI Gene:9973Re-query CCDS DB by CCDS ID:8146.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8146.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533244.6 ENSP00000436318.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000533244.6Link to Ensembl Protein Viewer:ENSP00000436318.1Re-query CCDS DB by Nucleotide ID:ENST00000533244Re-query CCDS DB by Protein ID:ENSP00000436318
Original member Current member NCBI NM_005125.2 NP_005116.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005125.2Link to Protein Sequence:NP_005116.1Re-query CCDS DB by Nucleotide ID:NM_005125Re-query CCDS DB by Protein ID:NP_005116Link to BLAST:NP_005116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005116.1 274 O14618 274 100% 0 0

Chromosomal Locations for CCDS 8146.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66593262 66593300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66593642 66593714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66599116 66599253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66599459 66599636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66600489 66600549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66605339 66605416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66605489 66605592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66605702 66605855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCTTCGGATTCGGGGAACCAGGGGACCCTCTGCACGTTGGAGTTCGCGGTGCAGATGACCTGTCAGA
GCTGTGTGGACGCGGTGCGCAAATCCCTGCAAGGGGTGGCAGGTGTCCAGGATGTGGAGGTGCACTTGGA
GGACCAGATGGTCTTGGTACACACCACTCTACCCAGCCAGGAGGTGCAGGCTCTCCTGGAAGGCACGGGG
CGGCAGGCGGTACTCAAGGGCATGGGCAGCGGCCAGTTGCAGAATCTGGGGGCAGCAGTGGCCATCCTGG
GGGGGCCTGGCACCGTGCAGGGGGTGGTGCGCTTCCTACAGCTGACCCCTGAGCGCTGCCTCATCGAGGG
AACTATTGACGGCCTGGAGCCTGGGCTGCATGGACTCCACGTCCATCAGTACGGGGACCTTACAAACAAC
TGCAACAGCTGTGGGAATCACTTTAACCCTGATGGAGCATCTCATGGGGGCCCCCAGGACTCTGACCGGC
ACCGCGGAGACCTGGGCAATGTCCGTGCTGATGCTGACGGCCGCGCCATCTTCAGAATGGAGGATGAGCA
GCTGAAGGTGTGGGATGTGATTGGCCGCAGCCTGATTATTGATGAGGGAGAAGATGACCTGGGCCGGGGA
GGCCATCCCTTATCCAAGATCACAGGGAACTCCGGGGAGAGGTTGGCCTGTGGCATCATTGCACGCTCCG
CTGGCCTTTTCCAGAACCCCAAGCAGATCTGCTCTTGCGATGGCCTCACCATCTGGGAGGAGCGAGGCCG
GCCCATCGCTGGCAAGGGCCGAAAGGAGTCAGCGCAGCCCCCTGCCCACCTTTGA

Translation (274 aa):
MASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTG
RQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNN
CNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRG
GHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIAGKGRKESAQPPAHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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