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Report for CCDS6448.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6448.2 Public Homo sapiens 9 PUM3 24 110 108 CCDS HistoryNCBI Gene:9933Re-query CCDS DB by CCDS ID:6448.2See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6448.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397885.3 ENSP00000380982.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397885.3Link to Ensembl Protein Viewer:ENSP00000380982.2Re-query CCDS DB by Nucleotide ID:ENST00000397885Re-query CCDS DB by Protein ID:ENSP00000380982
Original member Current member NCBI NM_014878.5 NP_055693.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014878.5Link to Protein Sequence:NP_055693.4Re-query CCDS DB by Nucleotide ID:NM_014878Re-query CCDS DB by Protein ID:NP_055693Link to BLAST:NP_055693.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055693.4 648 Q15397 648 100% 0 0

Chromosomal Locations for CCDS 6448.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 2804331 2804463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2807814 2807904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2810344 2810431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2811361 2811583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2812220 2812362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2820018 2820098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2823781 2823834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2824717 2824815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2827073 2827151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2828675 2828778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2829774 2829948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2830962 2831028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2831251 2831344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2833357 2833432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2834031 2834166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2837180 2837401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 2838426 2838507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGAAGTTAAAGGGAAAAAGCAATTCACAGGAAAGAGTACAAAGACAGCACAAGAAAAAAACAGATTTC
ATAAAAATAGTGATTCTGGTTCTTCAAAGACATTTCCAACAAGGAAAGTTGCTAAAGAAGGTGGACCTAA
AGTCACATCTAGGAACTTTGAGAAAAGTATCACAAAACTTGGGAAAAAGGGTGTAAAGCAGTTCAAGAAT
AAGCAGCAAGGGGACAAATCACCAAAGAACAAATTCCAGCCGGCAAATAAATTCAACAAGAAGAGAAAAT
TCCAGCCAGATGGTAGAAGCGATGAATCAGCAGCCAAGAAGCCCAAATGGGATGACTTCAAAAAGAAGAA
GAAAGAACTGAAGCAAAGCAGACAACTCAGTGATAAAACCAACTATGACATTGTTGTTCGGGCAAAGCAG
ATGTGGGAGATTTTAAGAAGAAAAGACTGTGACAAAGAAAAAAGAGTAAAGTTAATGAGTGATTTGCAGA
AGTTGATTCAAGGGAAAATTAAAACTATTGCATTTGCACACGATTCAACTCGTGTGATCCAGTGTTACAT
TCAGTATGGTAATGAAGAACAGAGAAAACAGGCTTTTGAAGAATTGCGAGATGATTTGGTTGAGTTAAGT
AAAGCCAAATATTCGAGAAATATTGTTAAGAAATTTCTCATGTATGGAAGTAAACCACAGATTGCAGAGA
TAATCAGAAGTTTTAAAGGCCACGTGAGGAAGATGCTGCGGCATGCGGAAGCATCAGCCATCGTGGAGTA
CGCATACAATGACAAAGCCATTTTGGAGCAGAGGAACATGCTGACGGAAGAGCTCTATGGGAACACATTT
CAGCTTTACAAGTCAGCAGATCACCGAACTCTGGACAAAGTGTTAGAGGTACAGCCAGAAAAATTAGAAC
TTATTATGGATGAAATGAAACAGATTCTAACTCCAATGGCCCAAAAGGAAGCTGTGATTAAGCACTCATT
GGTGCATAAAGTATTCTTGGACTTTTTTACCTATGCACCCCCCAAACTCAGATCAGAAATGATTGAAGCC
ATCCGCGAAGCGGTGGTCTACCTGGCACACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGC
ATGGCACGCCCAAGGACAGGAAAGTGATTGTGAAAACAATGAAGACTTATGTTGAAAAGGTGGCTAATGG
CCAATACTCCCATTTGGTTTTACTGGCGGCATTTGATTGTATTGATGATACTAAGCTTGTGAAGCAGATA
ATCATATCAGAAATTATCAGTTCATTGCCTAGCATAGTAAATGACAAATATGGAAGGAAGGTCCTATTGT
ACTTACTAAGCCCCAGAGATCCTGCACATACAGTACGAGAAATCATTGAAGTTCTGCAAAAAGGAGATGG
AAATGCACACAGTAAGAAAGATACAGAGGTCCGCAGACGGGAGCTCCTAGAATCCATTTCTCCAGCTTTG
TTAAGCTACCTGCAAGAACACGCCCAAGAAGTGGTGCTAGATAAGTCTGCGTGTGTGTTGGTGTCTGACA
TTCTGGGATCTGCCACTGGAGACGTTCAGCCTACCATGAATGCCATCGCCAGCTTGGCAGCAACAGGACT
GCATCCTGGTGGCAAGGACGGAGAGCTTCACATTGCAGAACATCCTGCAGGACATCTAGTTCTGAAGTGG
TTAATAGAGCAAGATAAAAAGATGAAAGAAAATGGGAGAGAAGGTTGTTTTGCAAAAACACTTGTAGAGC
ATGTTGGTATGAAGAACCTGAAGTCCTGGGCTAGTGTAAATCGAGGTGCCATTATTCTTTCTAGCCTCCT
CCAGAGTTGTGACCTGGAAGTTGCAAACAAAGTCAAAGCTGCACTGAAAAGCTTGATTCCTACATTGGAA
AAAACCAAAAGCACCAGCAAAGGAATAGAAATTCTACTTGAAAAACTGAGCACATAG

Translation (648 aa):
MEVKGKKQFTGKSTKTAQEKNRFHKNSDSGSSKTFPTRKVAKEGGPKVTSRNFEKSITKLGKKGVKQFKN
KQQGDKSPKNKFQPANKFNKKRKFQPDGRSDESAAKKPKWDDFKKKKKELKQSRQLSDKTNYDIVVRAKQ
MWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELS
KAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTF
QLYKSADHRTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEA
IREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQI
IISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRELLESISPAL
LSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIASLAATGLHPGGKDGELHIAEHPAGHLVLKW
LIEQDKKMKENGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLE
KTKSTSKGIEILLEKLST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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