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Report for CCDS7298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7298.1 Public Homo sapiens 10 SAR1A 24 110 108 CCDS HistoryNCBI Gene:56681Re-query CCDS DB by CCDS ID:7298.1Re-query CCDS DB by GeneID:56681See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373238.5 ENSP00000362335.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373238.5Link to Ensembl Protein Viewer:ENSP00000362335.1Re-query CCDS DB by Nucleotide ID:ENST00000373238Re-query CCDS DB by Protein ID:ENSP00000362335
Original member Current member EBI ENST00000373241.9 ENSP00000362338.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373241.9Link to Ensembl Protein Viewer:ENSP00000362338.4Re-query CCDS DB by Nucleotide ID:ENST00000373241Re-query CCDS DB by Protein ID:ENSP00000362338
Original member Current member EBI ENST00000373242.6 ENSP00000362339.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373242.6Link to Ensembl Protein Viewer:ENSP00000362339.1Re-query CCDS DB by Nucleotide ID:ENST00000373242Re-query CCDS DB by Protein ID:ENSP00000362339
Original member Current member EBI ENST00000431664.6 ENSP00000399698.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431664.6Link to Ensembl Protein Viewer:ENSP00000399698.2Re-query CCDS DB by Nucleotide ID:ENST00000431664Re-query CCDS DB by Protein ID:ENSP00000399698
Original member Current member NCBI NM_001142648.2 NP_001136120.1 Accepted alive Link to Nucleotide Sequence:NM_001142648.2Link to Protein Sequence:NP_001136120.1Re-query CCDS DB by Nucleotide ID:NM_001142648Re-query CCDS DB by Protein ID:NP_001136120Link to BLAST:NP_001136120.1
Original member Current member NCBI NM_020150.5 NP_064535.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020150.5Link to Protein Sequence:NP_064535.1Re-query CCDS DB by Nucleotide ID:NM_020150Re-query CCDS DB by Protein ID:NP_064535Link to BLAST:NP_064535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136120.1 198 Q9NR31-1 198 100% 0 0
NP_064535.1 198 Q9NR31-1 198 100% 0 0

Chromosomal Locations for CCDS 7298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70152476 70152592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70153838 70153969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70157764 70157867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70161004 70161069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70161619 70161738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70161858 70161915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGTCTTTCATCTTTGAGTGGATCTACAATGGCTTCAGCAGTGTGCTCCAGTTCCTAGGACTGTACAAGA
AATCTGGAAAACTTGTATTCTTAGGTTTGGATAATGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGA
TGACAGATTGGGCCAACATGTTCCAACACTACATCCGACATCAGAAGAGCTAACAATTGCTGGAATGACC
TTTACAACTTTTGATCTTGGTGGGCACGAGCAAGCACGTCGCGTTTGGAAAAATTATCTCCCAGCAATTA
ATGGGATTGTCTTTCTGGTGGACTGTGCAGATCATTCTCGCCTCGTGGAATCCAAAGTTGAGCTTAATGC
TTTAATGACTGATGAAACAATATCCAATGTGCCAATCCTTATCTTGGGTAACAAAATTGACAGAACAGAT
GCAATCAGTGAAGAAAAACTCCGTGAGATATTTGGGCTTTATGGACAGACCACAGGAAAGGGGAATGTGA
CCCTGAAGGAGCTGAATGCTCGCCCCATGGAAGTGTTCATGTGCAGTGTGCTCAAGAGGCAAGGTTACGG
CGAGGGTTTCCGCTGGCTCTCCCAGTATATTGACTGA

Translation (198 aa):
MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT
FTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTD
AISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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