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Report for CCDS30575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30575.1 Public Homo sapiens 1 KLHL21 24 110 108 CCDS HistoryNCBI Gene:9903Re-query CCDS DB by CCDS ID:30575.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377658.8 ENSP00000366886.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377658.8Link to Ensembl Protein Viewer:ENSP00000366886.4Re-query CCDS DB by Nucleotide ID:ENST00000377658Re-query CCDS DB by Protein ID:ENSP00000366886
Original member Current member NCBI NM_014851.4 NP_055666.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014851.4Link to Protein Sequence:NP_055666.2Re-query CCDS DB by Nucleotide ID:NM_014851Re-query CCDS DB by Protein ID:NP_055666Link to BLAST:NP_055666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055666.2 597 Q9UJP4-1 597 100% 0 0

Chromosomal Locations for CCDS 30575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 6593365 6593658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6595485 6595557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6599047 6599452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 6601797 6602817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGAGCGACCGGCGCCCCTGGCCGTGCTTCCCTTCTCGGACCCCGCGCACGCCCTGAGCCTGCTGCGCG
GCCTGAGCCAGCTGCGCGCCGAGCGCAAGTTCCTGGACGTGACCCTGGAGGCGGCGGGCGGGCGCGACTT
CCCGGCGCACCGTGCGGTGCTGGCCGCCGCCAGCCCCTACTTCCGCGCCATGTTCGCGGGGCAGCTGCGC
GAGAGCCGCGCCGAGCGGGTGCGCCTGCACGGAGTGCCTCCCGACATGCTGCAGCTGCTGCTGGACTTCA
GCTACACGGGCCGCGTGGCGGTAAGCGGCGACAACGCTGAGCCGCTGCTGCGCGCCGCCGACCTGCTGCA
GTTCCCGGCCGTGAAGGAGGCGTGCGGGGCCTTCCTGCAGCAGCAGCTCGACCTGGCCAACTGCCTGGAC
ATGCAGGACTTCGCTGAGGCCTTCAGCTGCTCGGGACTGGCGAGCGCGGCGCAGCGGTTCATTCTGCGCC
ACGTGGGCGAGCTGGGCGCCGAGCAGCTGGAGCGGCTGCCACTGGCGCGCCTGCTGCGCTACCTGCGGGA
CGACGGGCTGTGTGTGCCCAAGGAGGAGGCCGCCTACCAGCTGGCGCTGCGCTGGGTCCGCGCTGACCCG
CCGCGCCGCGCCGCGCACTGGCCGCAGCTGCTGGAGGCCGTGCGCCTGCCCTTCGTGCGCCGCTTCTACC
TGTTGGCGCACGTCGAGGCCGAGCCGCTGGTGGCGCGCTGCCCACCCTGCCTGCGCCTGCTGCGCGAGGC
GCGCGACTTCCAGGCGGCGCGCTACGACCGCCACGACCGCGGGCCCTGTCCCCGAATGCGTCCTCGCCCG
TCCACCGGTCTCGCCGAGATCCTCGTGCTCGTGGGCGGCTGCGACCAGGACTGTGACGAGCTGGTCACTG
TCGACTGCTACAACCCGCAGACGGGTCAGTGGCGCTACCTGGCCGAGTTCCCAGACCACCTGGGCGGAGG
CTACAGCATCGTGGCGCTGGGCAATGACATCTACGTGACGGGTGGGTCCGATGGCTCCCGGCTCTATGAC
TGCGTGTGGAGGTACAACTCAAGCGTGAATGAGTGGGCGGAGGTGGCGCCCATGCTGAAGGCCCGCGAGT
ACCACAGCTCCTCTGTGCTGGACGGACTGCTGTACGTGGTGGCCGCCGACAGCACCGAGCGCTATGACCA
CACCACTGACTCCTGGGAGGCCCTGCAGCCCATGACCTACCCCATGGACAACTGCTCCACCACTGCGTGC
CGTGGCCGGCTCTATGCCATCGGCTCCCTGGCTGGCAAGGAGACCATGGTGATGCAGTGCTACGACCCGG
ACACCGACCTGTGGTCGCTGGTGGACTGCGGCCAGCTCCCGCCCTGGTCCTTCGCCCCCAAGACTGCGAC
TCTAAACGGACTCATGTACTTTGTCAGGGATGACTCCGCTGAGGTGGACGTGTACAACCCGACGAGGAAC
GAATGGGACAAGATCCCGTCCATGAATCAGGTACATGTGGGGGGCAGCCTGGCCGTCCTTGGGGGGAAGC
TGTACGTCTCTGGGGGATACGACAATACATTTGAACTCTCGGACGTGGTAGAGGCCTATGACCCAGAGAC
TCGCGCGTGGAGCGTGGTGGGGCGGCTCCCAGAACCCACCTTCTGGCATGGCAGTGTCAGCATCTTCCGC
CAGTTCATGCCCCAGACCTTCTCGGGTGGGCGTGGCTTCGAGTTGGACAGTGGCAGCGATGACATGGACC
CAGGCCGACCCCGGCCGCCGCGGGACCCCGATGAGCTGCACTAG

Translation (597 aa):
MERPAPLAVLPFSDPAHALSLLRGLSQLRAERKFLDVTLEAAGGRDFPAHRAVLAAASPYFRAMFAGQLR
ESRAERVRLHGVPPDMLQLLLDFSYTGRVAVSGDNAEPLLRAADLLQFPAVKEACGAFLQQQLDLANCLD
MQDFAEAFSCSGLASAAQRFILRHVGELGAEQLERLPLARLLRYLRDDGLCVPKEEAAYQLALRWVRADP
PRRAAHWPQLLEAVRLPFVRRFYLLAHVEAEPLVARCPPCLRLLREARDFQAARYDRHDRGPCPRMRPRP
STGLAEILVLVGGCDQDCDELVTVDCYNPQTGQWRYLAEFPDHLGGGYSIVALGNDIYVTGGSDGSRLYD
CVWRYNSSVNEWAEVAPMLKAREYHSSSVLDGLLYVVAADSTERYDHTTDSWEALQPMTYPMDNCSTTAC
RGRLYAIGSLAGKETMVMQCYDPDTDLWSLVDCGQLPPWSFAPKTATLNGLMYFVRDDSAEVDVYNPTRN
EWDKIPSMNQVHVGGSLAVLGGKLYVSGGYDNTFELSDVVEAYDPETRAWSVVGRLPEPTFWHGSVSIFR
QFMPQTFSGGRGFELDSGSDDMDPGRPRPPRDPDELH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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