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Report for CCDS16548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16548.1 Public Mus musculus 2 Lpcat4 23 108 98 CCDS HistoryNCBI Gene:99010Re-query CCDS DB by CCDS ID:16548.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028554.3 ENSMUSP00000028554.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028554.3Link to Ensembl Protein Viewer:ENSMUSP00000028554.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028554Re-query CCDS DB by Protein ID:ENSMUSP00000028554
Original member Current member NCBI NM_207206.2 NP_997089.1 Accepted alive Link to Nucleotide Sequence:NM_207206.2Link to Protein Sequence:NP_997089.1Re-query CCDS DB by Nucleotide ID:NM_207206Re-query CCDS DB by Protein ID:NP_997089Link to BLAST:NP_997089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997089.1 524 Q6NVG1 524 100% 0 0

Chromosomal Locations for CCDS 16548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112239944 112240057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112241451 112241593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112241925 112242145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112242476 112242588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112242701 112242761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112243004 112243062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112243259 112243293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112243841 112243895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112243983 112244065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112244320 112244445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112244663 112244795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112245796 112245894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112246275 112246431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 112246712 112246887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGAGCCAGGGAAGTCCTGGGGCCTGGGCCCCCCTGGATCCCACCTCTGGGTCCTCTGCGTCCCCAAACC
CGTTCGTGCATGAGTTACACCTCTCCGGCCTCCAGAGGGTTAAGTTCTGCCTCCTGGGGGTACTGCTGGC
CCCAATCCGAGTACTTCTAGCTTTTATTGTCCTCTTTCTCCTCTGGCCCTTCGCGTGGCTCCAAGTAGCA
GGTCTCACTGAAGAGCAGCTTCAGGAACCAATTACAGGATGGAGGAAGACTGTATGCCACAACGGGGTTC
TTGGTCTGAGCCGCCTGCTATTTTTCCTGCTTGGCTTCCTTCGGATCCGTGTTCGGGGTCAAAGGGCCTC
TCGCCTCGAAGCCCCTGTCCTGGTTGCTGCCCCCCACTCAACTTTCTTTGACCCAATTGTCCTGCTACCC
TGTGACCTGCCCAAGGTTGTGTCTCGAGCTGAGAATCTTTCTGTGCCTGTCATTGGAGCACTCCTTCGAT
TTAATCAAGCCATCCTAGTCTCCCGGCATGACCCCGCCTCTCGGCGCAGAGTGGTTGAGGAGGTCAGAAG
GCGGGCTACTTCAGGAGGCAAGTGGCCTCAGGTACTATTTTTTCCTGAAGGCACCTGTTCCAACAAGAAG
GCTCTGCTGAAGTTCAAACCAGGAGCCTTCATCGCAGGGGTGCCCGTGCAGCCCGTCCTCATCCGATACC
CCAACAGTCTGGACACCACCAGCTGGGCATGGAGGGGCCCCGGCGTACTCAAAGTTCTCTGGCTCACCGC
CTCTCAGCCCTGCAGCATCGTGGATGTAGAGTTCCTCCCTGTCTATCAGCCCAGCCTGGAGGAGAGTAAG
GACCCCACCCTTTATGCCAACAACGTCCAGAGAGTCATGGCACAGGCCCTGGGCATTCCAGCCACTGAAT
GTGAGTTTGTAGGGAGCTTGCCTGTGATTGTGGTGGGCCAGCTGAAGGTAGCGTTGGAGCCGCAGCTCTG
GGAGCTGGCAAAGGTGCTACAGAAGGCTGGGCTGTCCCCTGGCTTTGTGGACATGGGGGCAGAGCCAGGC
CGGAGTCGAATGATCAGCCAAGAGGCCTTTGCCCAACAGTTACAGCTCTCGGATCCTCAGACAGTGGCTG
GTGCCTTCAGCTACTTCCAGCAGGATGCCAAGGGTTTGGTTGACTTCCGAAATGTGGCCCTAGCGCTAGC
GGCCCTGGACGGGGGCAGGAGCCTGGAGGAGCTGACTCGCCTGGCCTTTGAGCTCTTTGCTGAAGAGCAG
GCAGAAGGATCTGACCGGCTGCTGTACAAAGACGGCTTCAGCACCATCCTGCACCTGTTGCTGGGTTCAC
CCCGCCCCGCTGCCACGACTTTGCATGCCGAGCTGTGCCAGCCTGGATGCAGCCAGGGCCTCTCCCTCTG
TCAGTTCCAGAACTTCTCCCTCCACGACCCTCTGTACGGCAAGCTTTTCAGCGCCTACCTACGCCCCCCA
CACAAGCCTCGAAGCACCTCCCAGATACCAAATGCCTCATCCCCCAGCAGCCCCACTGCCCTGGCCAACG
GGACTGTGCAGGCCCCCAAGCAGAAGGGAGACTGA

Translation (524 aa):
MSQGSPGAWAPLDPTSGSSASPNPFVHELHLSGLQRVKFCLLGVLLAPIRVLLAFIVLFLLWPFAWLQVA
GLTEEQLQEPITGWRKTVCHNGVLGLSRLLFFLLGFLRIRVRGQRASRLEAPVLVAAPHSTFFDPIVLLP
CDLPKVVSRAENLSVPVIGALLRFNQAILVSRHDPASRRRVVEEVRRRATSGGKWPQVLFFPEGTCSNKK
ALLKFKPGAFIAGVPVQPVLIRYPNSLDTTSWAWRGPGVLKVLWLTASQPCSIVDVEFLPVYQPSLEESK
DPTLYANNVQRVMAQALGIPATECEFVGSLPVIVVGQLKVALEPQLWELAKVLQKAGLSPGFVDMGAEPG
RSRMISQEAFAQQLQLSDPQTVAGAFSYFQQDAKGLVDFRNVALALAALDGGRSLEELTRLAFELFAEEQ
AEGSDRLLYKDGFSTILHLLLGSPRPAATTLHAELCQPGCSQGLSLCQFQNFSLHDPLYGKLFSAYLRPP
HKPRSTSQIPNASSPSSPTALANGTVQAPKQKGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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